Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Reveiz M, Xu K, Lee M, Wang S, Olia AS, Harris DR, Liu K, Liu T, Schaub AJ, Stephens T, Wang Y, Zhang B, Huang R, Tsybovsky Y, Kwong PD, Rawi R
Front Immunol (2024) 15 pp. 1484029-1484029 [ Pubmed: 39611147 DOI: doi:10.3389/fimmu.2024.1484029 ]
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 env trimer complexed with antibody fab (Complex from Human immunodeficiency virus 1)
- Water (18 Da, Ligand)
- Antibody acs202 fab light chain (23 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Antibody acs202 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Antibody fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Pre-fusion Measles virus fusion protein complexed with Fab 77
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8ut2
Q-score: 0.583
Zyla DS, Della Marca R, Niemeyer G, Zipursky G, Stearns K, Leedale C, Sobolik EB, Callaway HM, Hariharan C, Peng W, Parekh D, Marcink TC, Diaz Avalos R, Horvat B, Mathieu C, Snijder J, Greninger AL, Hastie KM, Niewiesk S, Moscona A, Porotto M, Ollmann Saphire E
Science (2024) 384 pp. eadm8693-eadm8693 [ DOI: doi:10.1126/science.adm8693 Pubmed: 38935733 ]
- Water (18 Da, Ligand)
- Antibody 77 fab heavy chain, antibody 77 fab light chain (Complex from Mus musculus)
- Mab 77 light chain (25 kDa, Protein from Mus musculus)
- Measles virus fusion glycoprotein (Complex from Measles morbillivirus)
- Fusion glycoprotein f0 (12 kDa, Protein from Measles morbillivirus)
- Mab 77 heavy chain (52 kDa, Protein from Mus musculus)
- Fusion glycoprotein f0 (44 kDa, Protein from Measles morbillivirus)
- Structure of measles fusion glycoprotein in complex with fab 77 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of a class A GPCR/Fab complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8tlm
Q-score: 0.527
Sun D, Sun Y, Janezic E, Zhou T, Johnson M, Azumaya C, Noreng S, Chiu C, Seki A, Arenzana TL, Nicoludis JM, Shi Y, Wang B, Ho H, Joshi P, Tam C, Payandeh J, Comps-Agrar L, Wang J, Rutz S, Koerber JT, Masureel M
Nat Commun (2023) 14 pp. 7940-7940 [ DOI: doi:10.1038/s41467-023-43601-8 Pubmed: 38040762 ]
- Fab heavy chain (23 kDa, Protein from Oryctolagus cuniculus)
- C-c chemokine receptor type 8, green fluorescent protein fusion (76 kDa, Protein from Aequorea victoria)
- Ccr8_fab complex (Complex from Homo sapiens)
- Fab light chain (23 kDa, Protein from Oryctolagus cuniculus)
N2 neuraminidase of A/Tanzania/205/2010 H3N2 in complex with 4 FNI9 Fab molecules
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8g3n
Q-score: 0.549
Momont C, Dang HV, Zatta F, Hauser K, Wang C, di Iulio J, Minola A, Czudnochowski N, De Marco A, Branch K, Donermeyer D, Vyas S, Chen A, Ferri E, Guarino B, Powell AE, Spreafico R, Yim SS, Balce DR, Bartha I, Meury M, Croll TI, Belnap DM, Schmid MA, Schaiff WT, Miller JL, Cameroni E, Telenti A, Virgin HW, Rosen LE, Purcell LA, Lanzavecchia A, Snell G, Corti D, Pizzuto MS
Nature (2023) 618 pp. 590-597 [ Pubmed: 37258672 DOI: doi:10.1038/s41586-023-06136-y ]
- Fni9 fab light chain (23 kDa, Protein from Homo sapiens)
- Fni9 fab heavy chain (24 kDa, Protein from Homo sapiens)
- 4 fni9 fabs in complex with tetrameric n2 na protein from a/tanzania/2010 strain (420 kDa, Complex from Influenza A virus)
- Neuraminidase (54 kDa, Protein from Influenza A virus)
- Calcium ion (40 Da, Ligand)
N2 neuraminidase of A/Hong_Kong/2671/2019 in complex with 4 FNI9 Fab molecules
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8g3p
Q-score: 0.588
Momont C, Dang HV, Zatta F, Hauser K, Wang C, di Iulio J, Minola A, Czudnochowski N, De Marco A, Branch K, Donermeyer D, Vyas S, Chen A, Ferri E, Guarino B, Powell AE, Spreafico R, Yim SS, Balce DR, Bartha I, Meury M, Croll TI, Belnap DM, Schmid MA, Schaiff WT, Miller JL, Cameroni E, Telenti A, Virgin HW, Rosen LE, Purcell LA, Lanzavecchia A, Snell G, Corti D, Pizzuto MS
Nature (2023) 618 pp. 590-597 [ Pubmed: 37258672 DOI: doi:10.1038/s41586-023-06136-y ]
- Fni9 fab light chain (23 kDa, Protein from Homo sapiens)
- Neuraminidase (54 kDa, Protein from Influenza A virus)
- Fni9 fab heavy chain (24 kDa, Protein from Homo sapiens)
- N2 neuraminidase of a/hong_kong/2671/2019 in complex with 4 fni9 fab molecules (420 kDa, Complex from Influenza A virus)
- Calcium ion (40 Da, Ligand)
N2 neuraminidase of A/Tanzania/205/2010 H3N2 in complex with 3 FNI17 Fab molecules
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8g3q
Q-score: 0.621
Momont C, Dang HV, Zatta F, Hauser K, Wang C, di Iulio J, Minola A, Czudnochowski N, De Marco A, Branch K, Donermeyer D, Vyas S, Chen A, Ferri E, Guarino B, Powell AE, Spreafico R, Yim SS, Balce DR, Bartha I, Meury M, Croll TI, Belnap DM, Schmid MA, Schaiff WT, Miller JL, Cameroni E, Telenti A, Virgin HW, Rosen LE, Purcell LA, Lanzavecchia A, Snell G, Corti D, Pizzuto MS
Nature (2023) 618 pp. 590-597 [ Pubmed: 37258672 DOI: doi:10.1038/s41586-023-06136-y ]
- Fni17 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Fni17 fab light chain (23 kDa, Protein from Homo sapiens)
- Neuraminidase (54 kDa, Protein from Influenza A virus)
- 3 fni17 fabs in complex with tetrameric n2 na protein from a/tanzania/2010 strain (420 kDa, Complex from Influenza A virus)
- Calcium ion (40 Da, Ligand)
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8g3r
Q-score: 0.626
Momont C, Dang HV, Zatta F, Hauser K, Wang C, di Iulio J, Minola A, Czudnochowski N, De Marco A, Branch K, Donermeyer D, Vyas S, Chen A, Ferri E, Guarino B, Powell AE, Spreafico R, Yim SS, Balce DR, Bartha I, Meury M, Croll TI, Belnap DM, Schmid MA, Schaiff WT, Miller JL, Cameroni E, Telenti A, Virgin HW, Rosen LE, Purcell LA, Lanzavecchia A, Snell G, Corti D, Pizzuto MS
Nature (2023) 618 pp. 590-597 [ Pubmed: 37258672 DOI: doi:10.1038/s41586-023-06136-y ]
- Fni17 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Fni17 fab light chain (23 kDa, Protein from Homo sapiens)
- Neuraminidase (54 kDa, Protein from Influenza A virus)
- One fni17 fab in complex with tetrameric n2 na protein from a/tanzania/2010 strain with s245n s247t mutations (420 kDa, Complex from Influenza A virus)
- Calcium ion (40 Da, Ligand)
N2 neuraminidase of A/Hong_Kong/2671/2019 in complex with 4 FNI19 Fab molecules
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8g3v
Q-score: 0.646
Momont C, Dang HV, Zatta F, Hauser K, Wang C, di Iulio J, Minola A, Czudnochowski N, De Marco A, Branch K, Donermeyer D, Vyas S, Chen A, Ferri E, Guarino B, Powell AE, Spreafico R, Yim SS, Balce DR, Bartha I, Meury M, Croll TI, Belnap DM, Schmid MA, Schaiff WT, Miller JL, Cameroni E, Telenti A, Virgin HW, Rosen LE, Purcell LA, Lanzavecchia A, Snell G, Corti D, Pizzuto MS
Nature (2023) 618 pp. 590-597 [ Pubmed: 37258672 DOI: doi:10.1038/s41586-023-06136-y ]
- 4 fni19 fabs in complex with tetrameric n2 na protein from a/hong_kong/2671/2019 strain (420 kDa, Complex from Influenza A virus)
- Neuraminidase (54 kDa, Protein from Influenza A virus)
- Fni19 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fni19 fab light chain (23 kDa, Protein from Homo sapiens)
Neuraminidase of B/Massachusetts/02/2012 (Yamagata) in complex with 4 FNI17 Fab molecules
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8g3z
Q-score: 0.602
Momont C, Dang HV, Zatta F, Hauser K, Wang C, di Iulio J, Minola A, Czudnochowski N, De Marco A, Branch K, Donermeyer D, Vyas S, Chen A, Ferri E, Guarino B, Powell AE, Spreafico R, Yim SS, Balce DR, Bartha I, Meury M, Croll TI, Belnap DM, Schmid MA, Schaiff WT, Miller JL, Cameroni E, Telenti A, Virgin HW, Rosen LE, Purcell LA, Lanzavecchia A, Snell G, Corti D, Pizzuto MS
Nature (2023) 618 pp. 590-597 [ Pubmed: 37258672 DOI: doi:10.1038/s41586-023-06136-y ]
- Fni17 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Fni17 fab light chain (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Neuraminidase (55 kDa, Protein from Influenza B virus)
- 4 fni17 fabs in complex with tetrameric na protein from b/massachusetts/02/2012 (yamagata) strain (420 kDa, Complex from Influenza A virus)
N2 neuraminidase of A/Hong_Kong/2671/2019 in complex with 3 FNI19 Fab molecules
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8g40
Q-score: 0.582
Momont C, Dang HV, Zatta F, Hauser K, Wang C, di Iulio J, Minola A, Czudnochowski N, De Marco A, Branch K, Donermeyer D, Vyas S, Chen A, Ferri E, Guarino B, Powell AE, Spreafico R, Yim SS, Balce DR, Bartha I, Meury M, Croll TI, Belnap DM, Schmid MA, Schaiff WT, Miller JL, Cameroni E, Telenti A, Virgin HW, Rosen LE, Purcell LA, Lanzavecchia A, Snell G, Corti D, Pizzuto MS
Nature (2023) 618 pp. 590-597 [ Pubmed: 37258672 DOI: doi:10.1038/s41586-023-06136-y ]
- Neuraminidase (54 kDa, Protein from Influenza A virus)
- Fni19 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 3 fni19 fabs in complex with tetrameric n2 na protein from a/hong_kong/2671/2019 strain (420 kDa, Complex from Influenza A virus)
- Fni19 fab light chain (23 kDa, Protein from Homo sapiens)