Cryo-EM Structure of Eastern Equine Encephalitis Virus in complex with SKE26 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8dwo
Q-score: 0.483
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Ske26 fab light chain (23 kDa, Protein from Macaca fascicularis)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Envelope glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- Envelope glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- Ske26 fab heavy chain (25 kDa, Protein from Macaca fascicularis)
Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW19 fab
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8ded
Q-score: 0.363
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Skw19 fab light chain (23 kDa, Protein from Homo sapiens)
- Skw19 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein e2 (46 kDa, Protein from Western equine encephalitis virus)
- Western equine encephalitis virus (Virus from Western equine encephalitis virus)
- Spike glycoprotein e1 (47 kDa, Protein from Western equine encephalitis virus)
Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW24 fab
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8def
Q-score: 0.302
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Skw24 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein e2 (46 kDa, Protein from Western equine encephalitis virus)
- Western equine encephalitis virus (Virus from Western equine encephalitis virus)
- Skw24 fab light chain (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Western equine encephalitis virus)
Cryo-EM local refinement of antibody SKV09 in complex with VEEV alphavirus spike glycoprotein
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 8deq
Q-score: 0.19
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Cryo-em local refinement of antibody skv09 in complex with veev alphavirus spike glycoprotein (Complex from Venezuelan equine encephalitis virus)
- Skv09 fab heavy chain (13 kDa, Protein from Macaca)
- Spike glycoprotein e1 (43 kDa, Protein from Venezuelan equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Skv09 fab light chain (11 kDa, Protein from Macaca)
Cryo-EM local refinement of antibody SKV16 in complex with VEEV alphavirus spike glycoprotein
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8der
Q-score: 0.443
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Skv16 fab heavy chain (13 kDa, Protein from Macaca)
- Spike glycoprotein e2 (38 kDa, Protein from Venezuelan equine encephalitis virus)
- Cryo-em local refinement of antibody skv16 in complex with veev alphavirus spike glycoprotein (Complex from Venezuelan equine encephalitis virus)
- Spike glycoprotein e1 (43 kDa, Protein from Venezuelan equine encephalitis virus)
- Skv16 fab light chain (11 kDa, Protein from Macaca)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 19.0 Å
EM Method: Single-particle
Fitted PDBs: 7dwt
Q-score: 0.022
Fibriansah G, Lim EXY, Marzinek JK, Ng TS, Tan JL, Huber RG, Lim XN, Chew VSY, Kostyuchenko VA, Shi J, Anand GS, Bond PJ, Crowe Jr JE, Lok SM
PLoS Pathog (2021) 17 pp. e1009331-e1009331 [ Pubmed: 33621239 DOI: doi:10.1371/journal.ppat.1009331 ]
- Anti-dengue virus human monoclonal antibody 1c19 fab light chain (11 kDa, Protein from Homo sapiens)
- Antibody 1c19 fab (Complex)
- Dengue virus serotype 1 strain westpac 74 in complex with human antibody 1c19 fab (Complex from Dengue virus 1)
- Anti-dengue virus human monoclonal antibody 1c19 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Dengue virus 1 (Complex from Homo sapiens)
- Envelope protein (53 kDa, Protein from Dengue virus 1)
Resolution: 19.0 Å
EM Method: Single-particle
Fitted PDBs: 7dwu
Q-score: 0.021
Fibriansah G, Lim EXY, Marzinek JK, Ng TS, Tan JL, Huber RG, Lim XN, Chew VSY, Kostyuchenko VA, Shi J, Anand GS, Bond PJ, Crowe Jr JE, Lok SM
PLoS Pathog (2021) 17 pp. e1009331-e1009331 [ Pubmed: 33621239 DOI: doi:10.1371/journal.ppat.1009331 ]
- Anti-dengue virus human monoclonal antibody 1c19 fab light chain (11 kDa, Protein from Homo sapiens)
- Antibody 1c19 fab (Complex)
- Dengue virus 1 (Complex from Dengue virus 1)
- Anti-dengue virus human monoclonal antibody 1c19 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Dengue virus 1 (Complex from Homo sapiens)
- Envelope protein (53 kDa, Protein from Dengue virus 1)
Fibriansah G, Lim EXY, Marzinek JK, Ng TS, Tan JL, Huber RG, Lim XN, Chew VSY, Kostyuchenko VA, Shi J, Anand GS, Bond PJ, Crowe Jr JE, Lok SM
PLoS Pathog (2021) 17 pp. e1009331-e1009331 [ Pubmed: 33621239 DOI: doi:10.1371/journal.ppat.1009331 ]
- Dengue virus serotype 2 strain pvp94/07 membrane protein (Protein from Dengue virus 2)
- Dengue virus serotype 2 strain pvp94/07 in complex with human antibody 1c19 fab (Complex from Dengue virus 2)
- Dengue virus 2 (Complex from Homo sapiens)
- Human antibody 1c19 fab (Complex)
- Dengue virus serotype 2 strain pvp94/07 envelope protein (Protein from Dengue virus 2)
- Anti-dengue virus human monoclonal antibody 1c19 fab heavy chain (Protein from Homo sapiens)
- Anti-dengue virus human monoclonal antibody 1c19 fab light chain (Protein from Homo sapiens)
Fibriansah G, Lim EXY, Marzinek JK, Ng TS, Tan JL, Huber RG, Lim XN, Chew VSY, Kostyuchenko VA, Shi J, Anand GS, Bond PJ, Crowe Jr JE, Lok SM
PLoS Pathog (2021) 17 pp. e1009331-e1009331 [ Pubmed: 33621239 DOI: doi:10.1371/journal.ppat.1009331 ]
- Dengue virus serotype 2 strain pvp94/07 membrane protein (Protein from Dengue virus 2)
- Dengue virus serotype 2 strain pvp94/07 in complex with human antibody 1c19 fab (Complex from Dengue virus 2)
- Dengue virus 2 (Complex)
- Human antibody 1c19 fab (Complex)
- Dengue virus serotype 2 strain pvp94/07 envelope protein (Protein from Dengue virus 2)
- Anti-dengue virus human monoclonal antibody 1c19 fab heavy chain (Protein from Homo sapiens)
- Anti-dengue virus human monoclonal antibody 1c19 fab light chain (Protein from Homo sapiens)