SFTSV Gn in complex with JK-8/12 Fab
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8zhq
Q-score: 0.505
Zhang S, Shang H, Han S, Li J, Peng X, Wu Y, Yang X, Leng Y, Wang F, Cui N, Xu L, Zhang H, Guo Y, Xu X, Zhang N, Liu W, Li H
Ebiomedicine (2024) 111 pp. 105481-105481 [ Pubmed: 39644769 DOI: doi:10.1016/j.ebiom.2024.105481 ]
- Envelopment polyprotein (38 kDa, Protein from Severe fever with thrombocytopenia syndrome virus)
- Jk-8 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Jk-8 fab light chain (23 kDa, Protein from Homo sapiens)
- Jk-12 fab light chain (22 kDa, Protein from Homo sapiens)
- Jk-12 fab heavy chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ternary complex of sftsv gn with neutralizing antibodies fab jk-8 and jk-12 (150 kDa, Complex from Homo sapiens)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9c44
Q-score: 0.535
Liu P, Huang ML, Guo H, McCallum M, Si JY, Chen YM, Wang CL, Yu X, Shi LL, Xiong Q, Ma CB, Bowen JE, Tong F, Liu C, Sun YH, Yang X, Chen J, Guo M, Li J, Corti D, Veesler D, Shi ZL, Yan H
Nature (2024) 635 pp. 978-986 [ DOI: doi:10.1038/s41586-024-08121-5 Pubmed: 39478224 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S2l20 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 s bound by s2l20 fab (Complex from Homo sapiens)
- S2l20 fab heavy chain variable (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 S + S2L20 (local refinement of NTD and S2L20 Fab variable region)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9c45
Q-score: 0.552
Liu P, Huang ML, Guo H, McCallum M, Si JY, Chen YM, Wang CL, Yu X, Shi LL, Xiong Q, Ma CB, Bowen JE, Tong F, Liu C, Sun YH, Yang X, Chen J, Guo M, Li J, Corti D, Veesler D, Shi ZL, Yan H
Nature (2024) 635 pp. 978-986 [ DOI: doi:10.1038/s41586-024-08121-5 Pubmed: 39478224 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S2l20 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 s bound by s2l20 fab (Complex from Homo sapiens)
- S2l20 fab heavy chain variable (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Engineered peptide-specific binder in complex with HLA-DR1/CLIP
Resolution: 2.28 Å
EM Method: Single-particle
Fitted PDBs: 8vsj
Q-score: 0.528
Du H, Liu J, Jude KM, Yang X, Li Y, Bell B, Yang H, Kassardjian A, Blackson W, Mobedi A, Parekh U, Parra Sperberg RA, Julien JP, Mellins ED, Garcia KC, Huang PS
Nat Biotechnol (2024) [ Pubmed: 39672953 DOI: doi:10.1038/s41587-024-02466-y ]
- Hla class ii histocompatibility antigen, dr alpha chain (21 kDa, Protein from Homo sapiens)
- Engineered peptide-specific binder in complex with hla-dr1/clip (Complex from Homo sapiens)
- Hla class ii histocompatibility antigen dr beta chain (22 kDa, Protein from Homo sapiens)
- C44h10 fab light chain (23 kDa, Protein from Homo sapiens)
- C44h10 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Superantigen (15 kDa, Protein from Metamycoplasma arthritidis)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Class-ii-associated invariant chain peptide (1 kDa, Protein from Homo sapiens)
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8ghk
Q-score: 0.507
Nagashima KA, Dzimianski JV, Yang M, Abendroth J, Sautto GA, Ross TM, DuBois RM, Edwards TE, Mousa JJ
Structure (2024) 32 pp. 1079- [ Pubmed: 38810648 DOI: doi:10.1016/j.str.2024.05.001 ]
- Hemagglutinin (53 kDa, Protein from Influenza A virus)
- Cryoem structure of influenza a virus a/melbourner/1/1946 (h1n1) hemagglutinin bound to gs10-x6-be4 fab (221 kDa, Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gs10-x6-be4 fab heavy chain (16 kDa, Protein from Homo sapiens)
- Gs10-x6-be4 fab light chain (13 kDa, Protein from Homo sapiens)
Cryo-EM structure of X6 COBRA (H1N1) hemagglutinin bound to CR6261 Fab
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8f38
Q-score: 0.615
Nagashima KA, Dzimianski JV, Yang M, Abendroth J, Sautto GA, Ross TM, DuBois RM, Edwards TE, Mousa JJ
Structure (2024) 32 pp. 1079- [ Pubmed: 38810648 DOI: doi:10.1016/j.str.2024.05.001 ]
- Water (18 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cr6261 fab light chain (23 kDa, Protein from Homo sapiens)
- Hemagglutinin (63 kDa, Protein from synthetic construct)
- Cryo-em structure of x6 cobra (h1n1) hemagglutinin bound to cr6261 fab (450 kDa, Complex)
- Cr6261 fab heavy chain (24 kDa, Protein from Homo sapiens)
HIV-1 Env X18 UFO in complex with F6 Fab
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8gpg
Q-score: 0.409
Niu J, Wang Q, Zhao W, Meng B, Xu Y, Zhang X, Feng Y, Qi Q, Hao Y, Zhang X, Liu Y, Xiang J, Shao Y, Yang B
Nat Commun (2023) 14 pp. 4676-4676 [ DOI: doi:10.1038/s41467-023-40321-x Pubmed: 37542068 ]
- F6 fab light chain (24 kDa, Protein from Homo sapiens)
- Hiv-1 env x18 ufo (Complex from Human immunodeficiency virus 1)
- F6 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Hiv-1 env x18 ufo in complex with f6 fab (Complex from human)
- Hiv-1 env x18 ufo (69 kDa, Protein from Human immunodeficiency virus 1)
- F6 fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV-1 Env X18 UFO in complex with 8ANC195 Fab
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8gpi
Q-score: 0.525
Niu J, Wang Q, Zhao W, Meng B, Xu Y, Zhang X, Feng Y, Qi Q, Hao Y, Zhang X, Liu Y, Xiang J, Shao Y, Yang B
Nat Commun (2023) 14 pp. 4676-4676 [ DOI: doi:10.1038/s41467-023-40321-x Pubmed: 37542068 ]
- Hiv-1 env x18 ufo (Complex from Human immunodeficiency virus 1)
- 8anc195 fab (Complex from Homo sapiens)
- 8anc195 fab light chain (23 kDa, Protein from Homo sapiens)
- Hiv-1 env x18 ufo in complex with 8anc195 fab (Complex from Homo sapiens)
- 8anc195 fab heavy chain (24 kDa, Protein from Homo sapiens)
- X18 ufo gp41 (69 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV-1 Env X16 UFO in complex with 8ANC195 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8gpj
Q-score: 0.453
Niu J, Wang Q, Zhao W, Meng B, Xu Y, Zhang X, Feng Y, Qi Q, Hao Y, Zhang X, Liu Y, Xiang J, Shao Y, Yang B
Nat Commun (2023) 14 pp. 4676-4676 [ DOI: doi:10.1038/s41467-023-40321-x Pubmed: 37542068 ]
- 8anc195 fab (Complex from Homo sapiens)
- 8anc195 fab light chain (23 kDa, Protein from Homo sapiens)
- X16 ufo gp41 (69 kDa, Protein from Homo sapiens)
- 8anc195 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Hiv-1 env x16 ufo (Complex from Homo sapiens)
- Hiv-1 env x16 ufo in complex with 8anc195 fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Native serotonin transporter in complex with 15B8 Fab antibody in the presence of cocaine
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8de3
Q-score: 0.445
To Be Published
- Native serotonin transporter in complex with 15b8 fab antibody in the presence of cocaine (Complex from Sus scrofa)
- Cocaine (303 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- 15b8 fab light chain variable domain (11 kDa, Protein from Mus musculus)
- Transporter (60 kDa, Protein from Sus scrofa)
- Chloride ion (35 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 15b8 fab heavy chain variable domain (12 kDa, Protein from Mus musculus)