Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9c44
Q-score: 0.535
Liu P, Huang ML, Guo H, McCallum M, Si JY, Chen YM, Wang CL, Yu X, Shi LL, Xiong Q, Ma CB, Bowen JE, Tong F, Liu C, Sun YH, Yang X, Chen J, Guo M, Li J, Corti D, Veesler D, Shi ZL, Yan H
Nature (2024) 635 pp. 978-986 [ DOI: doi:10.1038/s41586-024-08121-5 Pubmed: 39478224 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S2l20 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 s bound by s2l20 fab (Complex from Homo sapiens)
- S2l20 fab heavy chain variable (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 S + S2L20 (local refinement of NTD and S2L20 Fab variable region)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9c45
Q-score: 0.552
Liu P, Huang ML, Guo H, McCallum M, Si JY, Chen YM, Wang CL, Yu X, Shi LL, Xiong Q, Ma CB, Bowen JE, Tong F, Liu C, Sun YH, Yang X, Chen J, Guo M, Li J, Corti D, Veesler D, Shi ZL, Yan H
Nature (2024) 635 pp. 978-986 [ DOI: doi:10.1038/s41586-024-08121-5 Pubmed: 39478224 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S2l20 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 s bound by s2l20 fab (Complex from Homo sapiens)
- S2l20 fab heavy chain variable (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8wpw
Q-score: 0.542
Su C, He JH, Qi JX, Yang MS, Wang QH, Gao GF
To Be Published
- Cb6 fab mutant heavy chain (24 kDa, Protein from Homo sapiens)
- S304 fab heavy chain (24 kDa, Protein from Homo sapiens)
- S309 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab (Complex from Severe acute respiratory syndrome-related coronavirus)
- Cb6 fab mutant light chain (23 kDa, Protein from Homo sapiens)
- S304 fab light chain (23 kDa, Protein from Homo sapiens)
- S309 fab light chain (23 kDa, Protein from Homo sapiens)
- Cryo-em structure of sars-cov-2 xbb.1.5 receptor-binding domain (rbd) complexed with cb6 mutant,s309, and s304 antibodies (Complex from Homo sapiens)
- Sars-cov-2 xbb.1.5 rbd (Complex)
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8wpy
Q-score: 0.488
Su C, He JH, Qi JX, Yang MS, Wang QH, Gao GF
To Be Published
- Cb6 fab mutant heavy chain (24 kDa, Protein from Homo sapiens)
- S304 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S309 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Fab (Complex from Severe acute respiratory syndrome-related coronavirus)
- Cb6 fab mutant light chain (23 kDa, Protein from Homo sapiens)
- Cryo-em structure of sars-cov-2 receptor-binding domain (rbd) complexed with cb6 mutant,s309, and s304 antibodies (Complex from Homo sapiens)
- S304 fab light chain (23 kDa, Protein from Homo sapiens)
- S309 fab light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 rbd (Complex)
HIV-1 Env X18 UFO in complex with F6 Fab
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8gpg
Q-score: 0.409
Niu J, Wang Q, Zhao W, Meng B, Xu Y, Zhang X, Feng Y, Qi Q, Hao Y, Zhang X, Liu Y, Xiang J, Shao Y, Yang B
Nat Commun (2023) 14 pp. 4676-4676 [ DOI: doi:10.1038/s41467-023-40321-x Pubmed: 37542068 ]
- F6 fab light chain (24 kDa, Protein from Homo sapiens)
- Hiv-1 env x18 ufo (Complex from Human immunodeficiency virus 1)
- F6 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Hiv-1 env x18 ufo in complex with f6 fab (Complex from human)
- Hiv-1 env x18 ufo (69 kDa, Protein from Human immunodeficiency virus 1)
- F6 fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV-1 Env X18 UFO in complex with 8ANC195 Fab
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8gpi
Q-score: 0.525
Niu J, Wang Q, Zhao W, Meng B, Xu Y, Zhang X, Feng Y, Qi Q, Hao Y, Zhang X, Liu Y, Xiang J, Shao Y, Yang B
Nat Commun (2023) 14 pp. 4676-4676 [ DOI: doi:10.1038/s41467-023-40321-x Pubmed: 37542068 ]
- Hiv-1 env x18 ufo (Complex from Human immunodeficiency virus 1)
- 8anc195 fab (Complex from Homo sapiens)
- 8anc195 fab light chain (23 kDa, Protein from Homo sapiens)
- Hiv-1 env x18 ufo in complex with 8anc195 fab (Complex from Homo sapiens)
- 8anc195 fab heavy chain (24 kDa, Protein from Homo sapiens)
- X18 ufo gp41 (69 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV-1 Env X16 UFO in complex with 8ANC195 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8gpj
Q-score: 0.453
Niu J, Wang Q, Zhao W, Meng B, Xu Y, Zhang X, Feng Y, Qi Q, Hao Y, Zhang X, Liu Y, Xiang J, Shao Y, Yang B
Nat Commun (2023) 14 pp. 4676-4676 [ DOI: doi:10.1038/s41467-023-40321-x Pubmed: 37542068 ]
- 8anc195 fab (Complex from Homo sapiens)
- 8anc195 fab light chain (23 kDa, Protein from Homo sapiens)
- X16 ufo gp41 (69 kDa, Protein from Homo sapiens)
- 8anc195 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Hiv-1 env x16 ufo (Complex from Homo sapiens)
- Hiv-1 env x16 ufo in complex with 8anc195 fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Omicron BA.4/5 SARS-CoV-2 S in complex with TH027 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7yve
Q-score: 0.47
Guo Y, Zhang G, Yang Q, Xie X, Lu Y, Cheng X, Wang H, Liang J, Tang J, Gao Y, Shang H, Dai J, Shi Y, Zhou J, Zhou J, Guo H, Yang H, Qi J, Liu L, Ma S, Zhang B, Huo Q, Xie Y, Wu J, Dong F, Zhang S, Lou Z, Gao Y, Song Z, Wang W, Sun Z, Yang X, Xiong D, Liu F, Chen X, Zhu P, Wang X, Cheng T, Rao Z
Nat Commun (2023) 14 pp. 3537-3537 [ DOI: doi:10.1038/s41467-023-39267-x Pubmed: 37322000 ]
- Omicron ba.4/5 sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Th027 fab (Complex from Homo sapiens)
- Th027 fab light chain (11 kDa, Protein from Homo sapiens)
- Omicron ba.5 sars-cov-2 s in complex with th027 fab (Complex)
- Th027 fab heavy chain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Omicron BA.4/5 SARS-CoV-2 S RBD in complex with TH027 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7yvf
Q-score: 0.518
Guo Y, Zhang G, Yang Q, Xie X, Lu Y, Cheng X, Wang H, Liang J, Tang J, Gao Y, Shang H, Dai J, Shi Y, Zhou J, Zhou J, Guo H, Yang H, Qi J, Liu L, Ma S, Zhang B, Huo Q, Xie Y, Wu J, Dong F, Zhang S, Lou Z, Gao Y, Song Z, Wang W, Sun Z, Yang X, Xiong D, Liu F, Chen X, Zhu P, Wang X, Cheng T, Rao Z
Nat Commun (2023) 14 pp. 3537-3537 [ DOI: doi:10.1038/s41467-023-39267-x Pubmed: 37322000 ]
- Th027 fab (Complex from Homo sapiens)
- Th027 fab light chain (11 kDa, Protein from Homo sapiens)
- Omicron ba.5 sars-cov-2 s rbd in complex with th027 fab (Complex)
- Th027 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Omicron ba.4/5 sars-cov-2 s (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Omicron BA.4/5 SARS-CoV-2 S in complex with TH132 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7yvg
Q-score: 0.384
Guo Y, Zhang G, Yang Q, Xie X, Lu Y, Cheng X, Wang H, Liang J, Tang J, Gao Y, Shang H, Dai J, Shi Y, Zhou J, Zhou J, Guo H, Yang H, Qi J, Liu L, Ma S, Zhang B, Huo Q, Xie Y, Wu J, Dong F, Zhang S, Lou Z, Gao Y, Song Z, Wang W, Sun Z, Yang X, Xiong D, Liu F, Chen X, Zhu P, Wang X, Cheng T, Rao Z
Nat Commun (2023) 14 pp. 3537-3537 [ DOI: doi:10.1038/s41467-023-39267-x Pubmed: 37322000 ]
- Th027 fab (Complex from Homo sapiens)
- Omicron ba.4/5 sars-cov-2 s in complex with th027 fab (Complex)
- Th132 fab heavy chain (12 kDa, Protein from Homo sapiens)
- Omicron ba.4/5 sars-cov-2 s (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Th132 fab light chain (11 kDa, Protein from Homo sapiens)