Composite cryoEM map of CD20 in complex with wild type Rituximab Fab
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8vgn
Q-score: 0.549
Kung JE, Johnson MC, Jao CC, Arthur CP, Tegunov D, Rohou A, Sudhamsu J
bioRxiv (2024) [ Pubmed: 38798381 DOI: doi:10.1101/2024.05.10.593593 ]
- Rituximab fab light chain (23 kDa, Protein from Homo sapiens)
- Rituximab fab heavy chain (24 kDa, Protein from Homo sapiens)
- Cd20 in complex with rituximab fab (Complex)
- Rituximab fab (Complex from Homo sapiens)
- B-lymphocyte antigen cd20 (31 kDa, Protein from Homo sapiens)
- Cd20 (Complex from Homo sapiens)
Consensus cryoEM map of CD20 in complex with wild type Rituximab Fab
Kung JE, Johnson MC, Jao CC, Arthur CP, Tegunov D, Rohou A, Sudhamsu J
bioRxiv (2024) [ Pubmed: 38798381 DOI: doi:10.1101/2024.05.10.593593 ]
- Cd20 (Complex from Homo sapiens)
- Rituximab fab light chain (Protein from Homo sapiens)
- Cd20 in complex with rituximab fab (Complex)
- Rituximab fab (Complex from Homo sapiens)
- Rituximab fab heavy chain (Protein from Homo sapiens)
- Cd20 (Protein from Homo sapiens)
Kung JE, Johnson MC, Jao CC, Arthur CP, Tegunov D, Rohou A, Sudhamsu J
bioRxiv (2024) [ Pubmed: 38798381 DOI: doi:10.1101/2024.05.10.593593 ]
- Cd20 (Complex from Homo sapiens)
- Rituximab fab light chain (Protein from Homo sapiens)
- Cd20 in complex with rituximab fab (Complex)
- Rituximab fab (Complex from Homo sapiens)
- Rituximab fab heavy chain (Protein from Homo sapiens)
- Cd20 (Protein from Homo sapiens)
Constituent map: Focused refinement of CD20 in complex of CD20 with Rituximab Fab
Kung JE, Johnson MC, Jao CC, Arthur CP, Tegunov D, Rohou A, Sudhamsu J
bioRxiv (2024) [ Pubmed: 38798381 DOI: doi:10.1101/2024.05.10.593593 ]
- Rituximab fab light chain (Protein from Homo sapiens)
- Cd20 in complex with rituximab fab (Complex)
- Rituximab fab (Complex from Homo sapiens)
- Rituximab heavy chain (Protein from Homo sapiens)
- Cd20 (Complex from Homo sapiens)
- Cd20 (Protein from Homo sapiens)
CryoEM structure of CD20 in complex with engineered conformationally rigid Rituximab.4DS Fab
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8vgo
Q-score: 0.565
Kung JE, Johnson MC, Jao CC, Arthur CP, Tegunov D, Rohou A, Sudhamsu J
bioRxiv (2024) [ Pubmed: 38798381 DOI: doi:10.1101/2024.05.10.593593 ]
- Rituximab.4ds fab heavy chain (25 kDa, Protein from Homo sapiens)
- Rituximab.4ds fab (Complex from Homo sapiens)
- Rituximab.4ds fab light chain (23 kDa, Protein from Homo sapiens)
- B-lymphocyte antigen cd20 (31 kDa, Protein from Homo sapiens)
- Cd20 in complex with rituximab.4ds fab (Complex)
- Cd20 (Complex from Homo sapiens)
Consensus cryoEM map of CD20 in complex with engineered conformationally rigid Rituximab.4DS Fab
Kung JE, Johnson MC, Jao CC, Arthur CP, Tegunov D, Rohou A, Sudhamsu J
bioRxiv (2024) [ Pubmed: 38798381 DOI: doi:10.1101/2024.05.10.593593 ]
- Rituximab.4ds fab (Complex from Homo sapiens)
- Rituximab.4ds fab heavy chain (Protein from Homo sapiens)
- Rituximab.4ds fab light chain (Protein from Homo sapiens)
- Cd20 in complex with rituximab.4ds fab (Complex)
- Cd20 (Complex from Homo sapiens)
- Cd20 (Protein from Homo sapiens)
Kung JE, Johnson MC, Jao CC, Arthur CP, Tegunov D, Rohou A, Sudhamsu J
bioRxiv (2024) [ Pubmed: 38798381 DOI: doi:10.1101/2024.05.10.593593 ]
- Rituximab.4ds fab (Complex from Homo sapiens)
- Rituximab.4ds fab heavy chain (Protein from Homo sapiens)
- Rituximab.4ds fab light chain (Protein from Homo sapiens)
- Cd20 in complex with rituximab.4ds fab (Complex)
- Cd20 (Complex from Homo sapiens)
- Cd20 (Protein from Homo sapiens)
Constituent map: Focused refinement of CD20 in complex of CD20 with Rituximab.4DS Fab
Kung JE, Johnson MC, Jao CC, Arthur CP, Tegunov D, Rohou A, Sudhamsu J
bioRxiv (2024) [ Pubmed: 38798381 DOI: doi:10.1101/2024.05.10.593593 ]
- Rituximab.4ds fab (Complex from Homo sapiens)
- Rituximab.4ds fab heavy chain (Protein from Homo sapiens)
- Rituximab.4ds fab light chain (Protein from Homo sapiens)
- Cd20 in complex with rituximab.4ds fab (Complex)
- Cd20 (Complex from Homo sapiens)
- Cd20 (Protein from Homo sapiens)
SARS-CoV-2 Spike S2 bound to Fab 54043-5
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8vcr
Q-score: 0.535
Johnson NV, Wall SC, Kramer KJ, Holt CM, Periasamy S, Richardson SI, Manamela NP, Suryadevara N, Andreano E, Paciello I, Pierleoni G, Piccini G, Huang Y, Ge P, Allen JD, Uno N, Shiakolas AR, Pilewski KA, Nargi RS, Sutton RE, Abu-Shmais AA, Parks R, Haynes BF, Carnahan RH, Crowe Jr JE, Montomoli E, Rappuoli R, Bukreyev A, Ross TM, Sautto GA, McLellan JS, Georgiev IS
Structure (2024) 32 pp. 1893- [ Pubmed: 39326419 DOI: doi:10.1016/j.str.2024.08.022 ]
- S2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s2 (65 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab 54043-5 (Complex from Homo sapiens)
- 54043-5 fab light chain (23 kDa, Protein from Homo sapiens)
- Trimeric s2 bound to fab 54043-5 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 54043-5 fab heavy chain (25 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike trimer in complex with Fab NE12, ensemble map
Chen Z, Zhang P, Matsuoka Y, Tsybovsky Y, West K, Santos C, Boyd LF, Nguyen H, Pomerenke A, Stephens T, Olia AS, Zhang B, De Giorgi V, Holbrook MR, Gross R, Postnikova E, Garza NL, Johnson RF, Margulies DH, Kwong PD, Alter HJ, Buchholz UJ, Lusso P, Farci P
Cell Rep (2022) 41 pp. 111528-111528 [ Pubmed: 36302375 DOI: doi:10.1016/j.celrep.2022.111528 ]
- Sars-cov-2 s6p spike trimer (Protein from Severe acute respiratory syndrome coronavirus 2)
- Ne12 fab heavy chain (Protein from Homo sapiens)
- Ne12 fab light chain (Protein from Homo sapiens)
- Sars-cov-2 s6p spike trimer in complex with fab ne12 (580 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)