Post-fusion ectodomain of HSV-1 gB in complex with BMPC-23 Fab
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7uhz
Q-score: 0.456
Kuraoka M, Aschner CB, Windsor IW, Mahant AM, Garforth SJ, Kong SL, Achkar JM, Almo SC, Kelsoe G, Herold BC
J Clin Inv (2023) 133 [ DOI: doi:10.1172/JCI161968 Pubmed: 36454639 ]
- Bmpc-23 fab light chain (12 kDa, Protein from Mus musculus)
- Envelope glycoprotein b (71 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
- Trimeric hsv-1 gb in complex with three bcmp-23 fabs (Complex from Mus musculus)
- Bmpc-23 fab heavy chain (13 kDa, Protein from Mus musculus)
G32A4 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7swn
Q-score: 0.358
Windsor IW, Tong P, Lavidor O, Moghaddam AS, McKay LGA, Gautam A, Chen Y, MacDonald EA, Yoo DK, Griffths A, Wesemann DR, Harrison SC
Sci Immunol (2022) 7 pp. eabo3425-eabo3425 [ Pubmed: 35536154 DOI: doi:10.1126/sciimmunol.abo3425 ]
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C98c7 fab in complex with wt sars-cov-2 rbd (Complex)
- G32a4 fab heavy chain (24 kDa, Protein from Homo sapiens)
- G32a4 fab light chain (23 kDa, Protein from Homo sapiens)
C98C7 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7swo
Q-score: 0.427
Windsor IW, Tong P, Lavidor O, Moghaddam AS, McKay LGA, Gautam A, Chen Y, MacDonald EA, Yoo DK, Griffths A, Wesemann DR, Harrison SC
Sci Immunol (2022) 7 pp. eabo3425-eabo3425 [ Pubmed: 35536154 DOI: doi:10.1126/sciimmunol.abo3425 ]
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C98c7 fab in complex with wt sars-cov-2 rbd (Complex)
- C98c7 fab heavy chain (23 kDa, Protein from Homo sapiens)
- C98c7 fab light chain (23 kDa, Protein from Homo sapiens)
G32Q4 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7swp
Q-score: 0.341
Windsor IW, Tong P, Lavidor O, Moghaddam AS, McKay LGA, Gautam A, Chen Y, MacDonald EA, Yoo DK, Griffths A, Wesemann DR, Harrison SC
Sci Immunol (2022) 7 pp. eabo3425-eabo3425 [ Pubmed: 35536154 DOI: doi:10.1126/sciimmunol.abo3425 ]
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- G32q4 fab heavy chain (25 kDa, Protein from Homo sapiens)
- G32q4 fab light chain (22 kDa, Protein from Homo sapiens)
- C98c7 fab in complex with wt sars-cov-2 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 S-RBD + Fab 54042-4
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 7t01
Q-score: 0.463
Kramer KJ, Johnson NV, Shiakolas AR, Suryadevara N, Periasamy S, Raju N, Williams JK, Wrapp D, Zost SJ, Walker LM, Wall SC, Holt CM, Hsieh CL, Sutton RE, Paulo A, Nargi RS, Davidson E, Doranz BJ, Crowe Jr JE, Bukreyev A, Carnahan RH, McLellan JS, Georgiev IS
Cell Rep (2021) 37 pp. 109784-109784 [ DOI: doi:10.1016/j.celrep.2021.109784 Pubmed: 34592170 ]
- 54042-4 fab - heavy chain (13 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 54042-4 fab - light chain (11 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 s-ecd with 54042-4 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7sc1
Q-score: 0.364
Vanshylla K, Fan C, Wunsch M, Poopalasingam N, Meijers M, Kreer C, Kleipass F, Ruchnewitz D, Ercanoglu MS, Gruell H, Munn F, Pohl K, Janicki H, Nolden T, Bartl S, Stein SC, Augustin M, Dewald F, Gieselmann L, Schommers P, Schulz TF, Sander LE, Koch M, Luksza M, Lassig M, Bjorkman PJ, Klein F
Cell Host Microbe (2022) 30 pp. 69-82.e10 [ Pubmed: 34973165 DOI: doi:10.1016/j.chom.2021.12.010 ]
- R40-1g8 fab (Complex from Homo sapiens)
- R40-1g8 fab heavy chain (23 kDa, Protein from Homo sapiens)
- R40-1g8 fab light chain (23 kDa, Protein from Homo sapiens)
- Severe acute respiratory syndrome coronavirus 2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 6p in complex with r40-1g8 (420 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7tas
Q-score: 0.522
Park YJ, De Marco A, Starr TN, Liu Z, Pinto D, Walls AC, Zatta F, Zepeda SK, Bowen JE, Sprouse KR, Joshi A, Giurdanella M, Guarino B, Noack J, Abdelnabi R, Foo SC, Rosen LE, Lempp FA, Benigni F, Snell G, Neyts J, Whelan SPJ, Virgin HW, Bloom JD, Corti D, Pizzuto MS, Veesler D
Science (2022) 375 pp. 449-454 [ Pubmed: 34990214 DOI: doi:10.1126/science.abm8143 ]
- S2k146 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike in complex with the s2k146 neutralizing antibody fab fragment (local refinement of the rbd and s2k146) (Complex from Severe acute respiratory syndrome coronavirus 2)
- S2k146 fab light chain (11 kDa, Protein from Homo sapiens)
- S2k146 (Complex from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7tat
Q-score: 0.448
Park YJ, De Marco A, Starr TN, Liu Z, Pinto D, Walls AC, Zatta F, Zepeda SK, Bowen JE, Sprouse KR, Joshi A, Giurdanella M, Guarino B, Noack J, Abdelnabi R, Foo SC, Rosen LE, Lempp FA, Benigni F, Snell G, Neyts J, Whelan SPJ, Virgin HW, Bloom JD, Corti D, Pizzuto MS, Veesler D
Science (2022) 375 pp. 449-454 [ Pubmed: 34990214 DOI: doi:10.1126/science.abm8143 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S2k146 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- S2k146 fab light chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike in complex with the s2k146 neutralizing antibody fab fragment (two receptor-binding domains open) (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S2k146 (Complex from Homo sapiens)
SARS-CoV-2 Spike (2P) in complex with C12C9 Fab (RBD local reconstruction)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7n62
Q-score: 0.428
Tong P, Gautam A, Windsor I, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Lelis FJN, Habibi S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
bioRxiv (2021) [ Pubmed: 33758863 DOI: doi:10.1101/2021.03.10.434840 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike in complex with 12-c9 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- C12c9 fab heavy chain (24 kDa, Protein from Homo sapiens)
- C12c9 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Spike (2P) in complex with G32R7 Fab (RBD and NTD local reconstruction)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7n64
Q-score: 0.393
Tong P, Gautam A, Windsor I, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Lelis FJN, Habibi S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
bioRxiv (2021) [ Pubmed: 33758863 DOI: doi:10.1101/2021.03.10.434840 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- G32r7 fab light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike in complex with g32r7 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- G32r7 fab heavy chain (25 kDa, Protein from Homo sapiens)