SARS-CoV-2 S B.1.617.2 delta variant + S2M11 + S2L20 Global Refinement
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7so9
Q-score: 0.6
McCallum M, Walls AC, Sprouse KR, Bowen JE, Rosen LE, Dang HV, De Marco A, Franko N, Tilles SW, Logue J, Miranda MC, Ahlrichs M, Carter L, Snell G, Pizzuto MS, Chu HY, Van Voorhis WC, Corti D, Veesler D
Science (2021) 374 pp. 1621-1626 [ DOI: doi:10.1126/science.abl8506 Pubmed: 34751595 ]
- S2l20 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- S2m11 fab light chain (11 kDa, Protein from Homo sapiens)
- S2l20 fab light chain (11 kDa, Protein from Homo sapiens)
- S2m11 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s b.1.617.2 delta variant + s2m11 fab + s2l20 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 S NTD B.1.617.2 delta variant + S2L20 Local Refinement
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7soa
Q-score: 0.553
McCallum M, Walls AC, Sprouse KR, Bowen JE, Rosen LE, Dang HV, De Marco A, Franko N, Tilles SW, Logue J, Miranda MC, Ahlrichs M, Carter L, Snell G, Pizzuto MS, Chu HY, Van Voorhis WC, Corti D, Veesler D
Science (2021) 374 pp. 1621-1626 [ DOI: doi:10.1126/science.abl8506 Pubmed: 34751595 ]
- S2l20 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 s ntd b.1.617.2 delta variant + s2l20 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- S2l20 fab light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 S B.1.617.1 kappa variant + S309 + S2L20 Global Refinement
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7sob
Q-score: 0.483
McCallum M, Walls AC, Sprouse KR, Bowen JE, Rosen LE, Dang HV, De Marco A, Franko N, Tilles SW, Logue J, Miranda MC, Ahlrichs M, Carter L, Snell G, Pizzuto MS, Chu HY, Van Voorhis WC, Corti D, Veesler D
Science (2021) 374 pp. 1621-1626 [ DOI: doi:10.1126/science.abl8506 Pubmed: 34751595 ]
- S2l20 fab heavy chain (13 kDa, Protein from Homo sapiens)
- S2l20 fab light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Water (18 Da, Ligand)
- S309 fab heavy chain (14 kDa, Protein from Homo sapiens)
- S309 fab light chain (10 kDa, Protein from Homo sapiens)
- Sars-cov-2 s b.1.617.1 kappa variant + s309 fab + s2l20 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 S RBD B.1.617.1 kappa variant S309 Local Refinement
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7soc
Q-score: 0.541
McCallum M, Walls AC, Sprouse KR, Bowen JE, Rosen LE, Dang HV, De Marco A, Franko N, Tilles SW, Logue J, Miranda MC, Ahlrichs M, Carter L, Snell G, Pizzuto MS, Chu HY, Van Voorhis WC, Corti D, Veesler D
Science (2021) 374 pp. 1621-1626 [ DOI: doi:10.1126/science.abl8506 Pubmed: 34751595 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S309 fab light chain (11 kDa, Protein from Homo sapiens)
- S309 fab heavy chain (14 kDa, Protein from Homo sapiens)
- Sars-cov-2 s rbd b.1.617.1 kappa variant + s309 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 S NTD B.1.617.1 kappa variant S2L20 Local Refinement
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7sod
Q-score: 0.551
McCallum M, Walls AC, Sprouse KR, Bowen JE, Rosen LE, Dang HV, De Marco A, Franko N, Tilles SW, Logue J, Miranda MC, Ahlrichs M, Carter L, Snell G, Pizzuto MS, Chu HY, Van Voorhis WC, Corti D, Veesler D
Science (2021) 374 pp. 1621-1626 [ DOI: doi:10.1126/science.abl8506 Pubmed: 34751595 ]
- S2l20 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S2l20 fab light chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 s ntd b.1.617.1 kappa variant + s2l20 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 S B.1.617.1 kappa variant + S2X303 Global Refinement
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7soe
Q-score: 0.452
McCallum M, Walls AC, Sprouse KR, Bowen JE, Rosen LE, Dang HV, De Marco A, Franko N, Tilles SW, Logue J, Miranda MC, Ahlrichs M, Carter L, Snell G, Pizzuto MS, Chu HY, Van Voorhis WC, Corti D, Veesler D
Science (2021) 374 pp. 1621-1626 [ DOI: doi:10.1126/science.abl8506 Pubmed: 34751595 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S2x303 fab light chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 s b.1.617.1 kappa variant + s2x303 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- S2x303 fab heavy chain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 S NTD B.1.617.1 kappa variant S2X303 Local Refinement
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7sof
Q-score: 0.461
McCallum M, Walls AC, Sprouse KR, Bowen JE, Rosen LE, Dang HV, De Marco A, Franko N, Tilles SW, Logue J, Miranda MC, Ahlrichs M, Carter L, Snell G, Pizzuto MS, Chu HY, Van Voorhis WC, Corti D, Veesler D
Science (2021) 374 pp. 1621-1626 [ DOI: doi:10.1126/science.abl8506 Pubmed: 34751595 ]
- Sars-cov-2 s ntd b.1.617.1 kappa variant + s2x303 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S2x303 fab light chain (11 kDa, Protein from Homo sapiens)
- S2x303 fab heavy chain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Density of TyTx4 Fab in Complex with Typhoid Toxin
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7k7i
Q-score: 0.487
Nguyen T, Richards AF, Neupane DP, Feathers JR, Yang YA, Sim JH, Byun H, Lee S, Ahn C, Van Slyke G, Fromme JC, Mantis NJ, Song J
Cell Rep (2021) 36 pp. 109654-109654 [ DOI: doi:10.1016/j.celrep.2021.109654 Pubmed: 34496256 ]
- Tytx4 fab (Complex from Mus musculus)
- Complex of tytx4 fab with typhoid toxin catalytic inactivated mutant (Complex)
- Fab heavy chain variable domain (13 kDa, Protein from Mus musculus)
- Fab light chain variable domain (11 kDa, Protein from Mus musculus)
- Typhoid toxin catalytically inactivated mutant (Complex from Salmonella enterica subsp. enterica serovar Typhi)
- Putative pertussis-like toxin subunit (12 kDa, Protein from Salmonella typhi)
SARS-CoV-2 S (B.1.429 / epsilon variant) + S2M11 + S2L20 Global Refinement
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 7n8h
Q-score: 0.594
McCallum M, Bassi J, De Marco A, Chen A, Walls AC, Di Iulio J, Tortorici MA, Navarro MJ, Silacci-Fregni C, Saliba C, Sprouse KR, Agostini M, Pinto D, Culap K, Bianchi S, Jaconi S, Cameroni E, Bowen JE, Tilles SW, Pizzuto MS, Guastalla SB, Bona G, Pellanda AF, Garzoni C, Van Voorhis WC, Rosen LE, Snell G, Telenti A, Virgin HW, Piccoli L, Corti D, Veesler D
Science (2021) 373 pp. 648-654 [ Pubmed: 34210893 DOI: doi:10.1126/science.abi7994 ]
- S2m11 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- S2l20 fab heavy chain variable region (13 kDa, Protein from Homo sapiens)
- S2m11 fab heavy chain variable region (13 kDa, Protein from Homo sapiens)
- S2l20 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 s (b.1.429 / epsilon variant) bound to s2m11 and s2l20 fabs (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 S (B.1.429 / epsilon variant) + S2M11 + S2L20 (Local Refinement of the NTD/S2L20)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7n8i
Q-score: 0.582
McCallum M, Bassi J, De Marco A, Chen A, Walls AC, Di Iulio J, Tortorici MA, Navarro MJ, Silacci-Fregni C, Saliba C, Sprouse KR, Agostini M, Pinto D, Culap K, Bianchi S, Jaconi S, Cameroni E, Bowen JE, Tilles SW, Pizzuto MS, Guastalla SB, Bona G, Pellanda AF, Garzoni C, Van Voorhis WC, Rosen LE, Snell G, Telenti A, Virgin HW, Piccoli L, Corti D, Veesler D
Science (2021) 373 pp. 648-654 [ Pubmed: 34210893 DOI: doi:10.1126/science.abi7994 ]
- S2l20 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 s (b.1.429 / epsilon variant) bound to s2l20 fab (Complex from Homo sapiens)
- S2l20 fab heavy chain variable region (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)