Methyl-coenzyme M reductase activation complex binding to the A2 component
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8s7v
Q-score: 0.569
Ramirez-Amador F, Paul S, Kumar A, Schuller JM
To Be Published
- Magnesium ion (24 Da, Ligand)
- Factor 430 (906 Da, Ligand)
- Methyl-coenzyme m reductase subunit beta (46 kDa, Protein from Methanococcus maripaludis)
- O-phosphono-n-{(2e)-7-[(2-sulfoethyl)dithio]hept-2-enoyl}-l-threonine (481 Da, Ligand)
- Glycine betaine/carnitine/choline transport atp-binding protein opuca (59 kDa, Protein from Methanococcus maripaludis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Fefe cofactor (747 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Methanogenesis marker protein 17 (21 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase subunit gamma (29 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase subunit alpha (61 kDa, Protein from Methanococcus maripaludis)
- Methanogenesis marker protein 7 (35 kDa, Protein from Methanococcus maripaludis)
- Upf0288 protein mmarc6_0796 (56 kDa, Protein from Methanococcus maripaludis)
- Duf2098 domain-containing protein (10 kDa, Protein from Methanococcus maripaludis)
- Coenzyme b (343 Da, Ligand)
- Methyl-coenzyme m reductase operon protein c (24 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase activation complex binding to a2 component (480 kDa, Complex from Methanococcus maripaludis)
- 1-thioethanesulfonic acid (142 Da, Ligand)
Methyl-coenzyme M reductase activation complex without the A2 component
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8s7x
Q-score: 0.559
Ramirez-Amador F, Paul S, Kumar A, Schuller JM
To Be Published
- Duf2098 domain-containing protein (10 kDa, Protein from Methanococcus maripaludis)
- Factor 430 (906 Da, Ligand)
- O-phosphono-n-{(2e)-7-[(2-sulfoethyl)dithio]hept-2-enoyl}-l-threonine (481 Da, Ligand)
- Fefe cofactor (747 Da, Ligand)
- Methanogenesis marker protein 17 (21 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase subunit gamma (29 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase subunit alpha (61 kDa, Protein from Methanococcus maripaludis)
- Methanogenesis marker protein 7 (35 kDa, Protein from Methanococcus maripaludis)
- Upf0288 protein mmarc6_0796 (56 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase activation complex without a2 component (420 kDa, Complex from Methanococcus maripaludis)
- Coenzyme b (343 Da, Ligand)
- Methyl-coenzyme m reductase operon protein c (24 kDa, Protein from Methanococcus maripaludis)
- 1-thioethanesulfonic acid (142 Da, Ligand)
- Methyl-coenzyme m reductase subunit beta (46 kDa, Protein from Methanococcus maripaludis)
Methyl-coenzyme M reductase activation complex binding to the A2 component after incubation with ATP
Resolution: 2.14 Å
EM Method: Single-particle
Fitted PDBs: 9h1l
Q-score: 0.599
Ramirez-Amador F, Paul S, Kumar A, Schuller JM
To Be Published
- Magnesium ion (24 Da, Ligand)
- Factor 430 (906 Da, Ligand)
- Methyl-coenzyme m reductase subunit beta (46 kDa, Protein from Methanococcus maripaludis)
- O-phosphono-n-{(2e)-7-[(2-sulfoethyl)dithio]hept-2-enoyl}-l-threonine (481 Da, Ligand)
- Glycine betaine/carnitine/choline transport atp-binding protein opuca (59 kDa, Protein from Methanococcus maripaludis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Fefe cofactor (747 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Methanogenesis marker protein 17 (21 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase subunit gamma (29 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase subunit alpha (61 kDa, Protein from Methanococcus maripaludis)
- Methanogenesis marker protein 7 (35 kDa, Protein from Methanococcus maripaludis)
- Upf0288 protein mmarc6_0796 (56 kDa, Protein from Methanococcus maripaludis)
- Duf2098 domain-containing protein (10 kDa, Protein from Methanococcus maripaludis)
- Coenzyme b (343 Da, Ligand)
- Methyl-coenzyme m reductase operon protein c (24 kDa, Protein from Methanococcus maripaludis)
- Methyl-coenzyme m reductase activation complex binding to the a2 component after incubation with atp (500 kDa, Complex from Methanococcus maripaludis)
- 1-thioethanesulfonic acid (142 Da, Ligand)
Iron Nitrogenase Complex from Rhodobacter capsulatus
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8oie
Q-score: 0.666
Schmidt FV, Schulz L, Zarzycki J, Prinz S, Oehlmann NN, Erb TJ, Rebelein JG
Nat Struct Mol Biol (2024) 31 pp. 150-158 [ Pubmed: 38062208 DOI: doi:10.1038/s41594-023-01124-2 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aluminum fluoride (83 Da, Ligand)
- Iron nitrogenase complex from rhodobacter capsulatus (360 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Nitrogenase iron protein (30 kDa, Protein from Rhodobacter capsulatus SB 1003)
- 3-hydroxy-3-carboxy-adipic acid (206 Da, Ligand)
- Nitrogenase iron-iron protein, beta subunit (50 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Nitrogenase iron-iron protein delta chain (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Fefe cofactor (747 Da, Ligand)
- Fe(8)-s(7) cluster (671 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Nitrogenase protein alpha chain (60 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Water (18 Da, Ligand)