Mature HIV-1 matrix from MA-SP1 cleavage mutant
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9h1p
Q-score: 0.522
Stacey JCV, Hrebik D, Nand E, Shetty SD, Qu K, Boicu M, Anders-Osswein M, Dick RA, Mothes W, Krausslich HG, Muller B, Briggs JAG
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.06.622200 Pubmed: 39574591 ]
- Gag polyprotein (14 kDa, Protein from Human immunodeficiency virus type 1 group M subtype B (isolate NY5))
- Hiv-1 vector pnl4-3 (82 MDa, Virus from HIV-1 vector pNL4-3)
- Hiv-1 mature matrix (Complex from HIV-1 vector pNL4-3)
- Gag polyprotein (1 kDa, Protein from Human immunodeficiency virus type 1 group M subtype B (isolate NY5))
Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles
Resolution: 2.18 Å
EM Method: Single-particle
Fitted PDBs: 9d6d
Q-score: 0.587
Wu C, Meuser ME, Rey JS, Meshkin H, Yang R, Devarkar SC, Freniere C, Shi J, Aiken C, Perilla JR, Xiong Y
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.09.617473 Pubmed: 39416065 ]
- Water (18 Da, Ligand)
- Lenacapavir (968 Da, Ligand)
- Inositol hexakisphosphate (660 Da, Ligand)
- Gag polyprotein (25 kDa, Protein from Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE))
- Human immunodeficiency virus type 1 (new york-5 isolate) (Virus from Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE))
Gag CA-SP1 immature lattice bound with Bevirimat from enveloped virus like particles
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 9d6e
Q-score: 0.467
Wu C, Meuser ME, Rey JS, Meshkin H, Yang R, Devarkar SC, Freniere C, Shi J, Aiken C, Perilla JR, Xiong Y
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.09.617473 Pubmed: 39416065 ]
- Gag polyprotein (25 kDa, Protein from Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE))
- Inositol hexakisphosphate (660 Da, Ligand)
- Human immunodeficiency virus type 1 (new york-5 isolate) (Virus from Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE))
- 3alpha-[(3-carboxy-3-methylbutanoyl)oxy]-8alpha,9beta,10alpha,13alpha,17alpha,19beta-lup-20(29)-en-28-oic acid (584 Da, Ligand)
Gag CA-SP1 immature lattice from enveloped and perforated virus like particles
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 9d88
Q-score: 0.474
Wu C, Meuser ME, Rey JS, Meshkin H, Yang R, Devarkar SC, Freniere C, Shi J, Aiken C, Perilla JR, Xiong Y
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.09.617473 Pubmed: 39416065 ]
In situ cryoEM structure of the Prototype Foamy Virus capsid, icosahedral map
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 8ozk
Q-score: 0.425
Calcraft T, Stanke-Scheffler N, Nans A, Lindemann D, Taylor IA, Rosenthal PB
Cell (2024) 187 pp. 4213-4230.e19 [ Pubmed: 39013471 DOI: doi:10.1016/j.cell.2024.06.017 ]
In situ cryoEM structure of the Prototype Foamy Virus capsid, pentamer localised reconstruction
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ozl
Q-score: 0.564
Calcraft T, Stanke-Scheffler N, Nans A, Lindemann D, Taylor IA, Rosenthal PB
Cell (2024) 187 pp. 4213-4230.e19 [ Pubmed: 39013471 DOI: doi:10.1016/j.cell.2024.06.017 ]
In situ cryoEM structure of the Prototype Foamy Virus capsid, hexamer 1 localised reconstruction
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ozm
Q-score: 0.565
Calcraft T, Stanke-Scheffler N, Nans A, Lindemann D, Taylor IA, Rosenthal PB
Cell (2024) 187 pp. 4213-4230.e19 [ DOI: doi:10.1016/j.cell.2024.06.017 Pubmed: 39013471 ]
In situ cryoEM structure of the Prototype Foamy Virus capsid, hexamer 2 localised reconstruction
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8ozn
Q-score: 0.545
Calcraft T, Stanke-Scheffler N, Nans A, Lindemann D, Taylor IA, Rosenthal PB
Cell (2024) 187 pp. 4213-4230.e19 [ Pubmed: 39013471 DOI: doi:10.1016/j.cell.2024.06.017 ]
A 3.7 Angstrom structure of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH8
Resolution: 3.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6t61
Q-score: 0.419
Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM
PLoS Pathog (2020) 16 pp. e1008277-e1008277 [ DOI: doi:10.1371/journal.ppat.1008277 Pubmed: 31986188 ]
A structure of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH6
Resolution: 3.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6t63
Q-score: 0.435
Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM
PLoS Pathog (2020) 16 pp. e1008277-e1008277 [ DOI: doi:10.1371/journal.ppat.1008277 Pubmed: 31986188 ]