SpCas9-MMLV RT-pegRNA-target DNA complex (termination)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8wus
Q-score: 0.454
Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O
Nature (2024) 631 pp. 224-231 [ DOI: doi:10.1038/s41586-024-07497-8 Pubmed: 38811740 ]
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes serotype M1)
- Dna (40-mer) (12 kDa, DNA from Streptococcus pyogenes)
- Dna (51-mer) (15 kDa, DNA from Streptococcus pyogenes)
- Gag-pol polyprotein (55 kDa, Protein from Moloney murine leukemia virus)
- Dna (5'-d(*tp*gp*ap*tp*gp*gp*cp*ap*gp*ap*gp*tp*ap*cp*tp*ap*g)-3') (5 kDa, DNA from Streptococcus pyogenes)
- Spcas9-mmlv rt-pegrna-target dna complex (Complex from Streptococcus pyogenes)
- Rna (115-mer) (37 kDa, RNA from Streptococcus pyogenes)
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8wut
Q-score: 0.364
Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O
Nature (2024) 631 pp. 224-231 [ DOI: doi:10.1038/s41586-024-07497-8 Pubmed: 38811740 ]
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes serotype M1)
- Dna (51-mer) (15 kDa, DNA from Streptococcus pyogenes)
- Gag-pol polyprotein (55 kDa, Protein from Moloney murine leukemia virus)
- Dna (5'-d(*tp*gp*ap*tp*gp*gp*cp*ap*gp*ap*gp*tp*ap*cp*tp*ap*g)-3') (5 kDa, DNA from Streptococcus pyogenes)
- Spcas9-mmlv rt-pegrna-target dna complex (Complex from Streptococcus pyogenes)
- Dna/rna (35-mer) (10 kDa, Macromolecule from Streptococcus pyogenes)
- Rna (115-mer) (37 kDa, RNA from Streptococcus pyogenes)
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8wuv
Q-score: 0.354
Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O
Nature (2024) 631 pp. 224-231 [ DOI: doi:10.1038/s41586-024-07497-8 Pubmed: 38811740 ]
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes serotype M1)
- Dna (51-mer) (15 kDa, DNA from Streptococcus pyogenes)
- Dna (5'-d(*tp*gp*ap*tp*gp*gp*cp*ap*gp*ap*gp*tp*ap*cp*tp*ap*g)-3') (5 kDa, DNA from Streptococcus pyogenes)
- Dna (50-mer) (15 kDa, DNA from Streptococcus pyogenes)
- Rna (137-mer) (44 kDa, RNA from Streptococcus pyogenes)
- Gag-pol polyprotein (55 kDa, Protein from Moloney murine leukemia virus)
- Spcas9-mmlv rt-pegrna-target dna complex (Complex from Streptococcus pyogenes)
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8ygj
Q-score: 0.354
Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O
Nature (2024) 631 pp. 224-231 [ DOI: doi:10.1038/s41586-024-07497-8 Pubmed: 38811740 ]
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes serotype M1)
- Dna (5'-d(p*tp*gp*ap*tp*gp*gp*cp*ap*gp*ap*gp*tp*ap*cp*tp*ap*g)-3') (5 kDa, DNA from Streptococcus pyogenes)
- Dna (51-mer) (15 kDa, DNA from Streptococcus pyogenes)
- Gag-pol polyprotein (55 kDa, Protein from Moloney murine leukemia virus)
- Dna (62-mer) (19 kDa, DNA from Streptococcus pyogenes)
- Spcas9-mmlv rt-pegrna-target dna complex (Complex from Streptococcus pyogenes)
- Rna (137-mer) (44 kDa, RNA from Streptococcus pyogenes)
Cryo-EM Structure of the RT component of the HIV-1 Pol Polyprotein
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7sep
Q-score: 0.346
Harrison JJEK, Passos DO, Bruhn JF, Bauman JD, Tuberty L, DeStefano JJ, Ruiz FX, Lyumkis D, Arnold E
Sci Adv (2022) 8 pp. eabn9874-eabn9874 [ Pubmed: 35857464 DOI: doi:10.1126/sciadv.abn9874 ]
- Rt portion of hiv-1 pol (120 kDa, Complex from Human immunodeficiency virus type 1 BH10)
- Gag-pol polyprotein (119 kDa, Protein from Human immunodeficiency virus type 1 BH10)
Cryo-EM Structure of the PR-RT components of the HIV-1 Pol Polyprotein
Resolution: 8.2 Å
EM Method: Single-particle
Fitted PDBs: 7sjx
Q-score: 0.188
Harrison JJEK, Passos DO, Bruhn JF, Bauman JD, Tuberty L, DeStefano JJ, Ruiz FX, Lyumkis D, Arnold E
Sci Adv (2022) 8 pp. eabn9874-eabn9874 [ Pubmed: 35857464 DOI: doi:10.1126/sciadv.abn9874 ]
Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 7q5b
Q-score: 0.305
Abascal-Palacios G, Jochem L, Pla-Prats C, Beuron F, Vannini A
Nat Commun (2021) 12 pp. 6992-6992 [ Pubmed: 34848735 DOI: doi:10.1038/s41467-021-27338-w ]
- Transcription factor tfiiib component b'' (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (Complex from Saccharomyces cerevisiae S288C)
- Transcription factor iiib 70 kda subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (34-mer) (10 kDa, DNA from Saccharomyces cerevisiae S288C)
- Tfiiib transcription factor (Complex from Saccharomyces cerevisiae S288C)
- Ty3 retrotransposon engaged with tfiiib transcription factor and trna promoter (Complex)
- Transposon ty3-g gag-pol polyprotein (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (9-mer) (2 kDa, DNA from Saccharomyces cerevisiae S288C)
- Tata-box-binding protein (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (19-mer) (5 kDa, DNA from Saccharomyces cerevisiae S288C)
- Dna (31-mer) (9 kDa, DNA from Saccharomyces cerevisiae S288C)
- Dna (56-mer) (17 kDa, DNA from Saccharomyces cerevisiae S288C)
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 6y9v
Q-score: 0.155
Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P
Nat Struct Mol Biol (2020) 27 pp. 855-862 [ Pubmed: 32747784 DOI: doi:10.1038/s41594-020-0467-8 ]
- Hiv-1 capsid (Complex from Human immunodeficiency virus 1)
- Gag-pol polyprotein (24 kDa, Protein from Human immunodeficiency virus 1)
- Peptidyl-prolyl cis-trans isomerase a (17 kDa, Protein from Homo sapiens)
- In vitro assembled hiv-1 capsid in tubular assembly (Complex)
- Cyclophilin a (Complex from Homo sapiens)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6y9w
Q-score: 0.274
Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P
Nat Struct Mol Biol (2020) 27 pp. 855-862 [ Pubmed: 32747784 DOI: doi:10.1038/s41594-020-0467-8 ]
- Hiv-1 capsid (Complex from Human immunodeficiency virus 1)
- Gag-pol polyprotein (24 kDa, Protein from Human immunodeficiency virus 1)
- Peptidyl-prolyl cis-trans isomerase a (17 kDa, Protein from Homo sapiens)
- In vitro assembled hiv-1 capsid in tubular assembly (Complex)
- Cyclophilin a (Complex from Homo sapiens)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6y9x
Q-score: 0.219
Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P
Nat Struct Mol Biol (2020) 27 pp. 855-862 [ Pubmed: 32747784 DOI: doi:10.1038/s41594-020-0467-8 ]
- Hiv-1 capsid (Complex from Human immunodeficiency virus 1)
- Gag-pol polyprotein (24 kDa, Protein from Human immunodeficiency virus 1)
- Peptidyl-prolyl cis-trans isomerase a (17 kDa, Protein from Homo sapiens)
- In vitro assembled hiv-1 capsid in tubular assembly (Complex)
- Cyclophilin a (Complex from Homo sapiens)