Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 7q5b
Q-score: 0.305
Abascal-Palacios G, Jochem L, Pla-Prats C, Beuron F, Vannini A
Nat Commun (2021) 12 pp. 6992-6992 [ Pubmed: 34848735 DOI: doi:10.1038/s41467-021-27338-w ]
- Transcription factor tfiiib component b'' (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (Complex from Saccharomyces cerevisiae S288C)
- Transcription factor iiib 70 kda subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (34-mer) (10 kDa, DNA from Saccharomyces cerevisiae S288C)
- Tfiiib transcription factor (Complex from Saccharomyces cerevisiae S288C)
- Ty3 retrotransposon engaged with tfiiib transcription factor and trna promoter (Complex)
- Transposon ty3-g gag-pol polyprotein (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (9-mer) (2 kDa, DNA from Saccharomyces cerevisiae S288C)
- Tata-box-binding protein (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (19-mer) (5 kDa, DNA from Saccharomyces cerevisiae S288C)
- Dna (31-mer) (9 kDa, DNA from Saccharomyces cerevisiae S288C)
- Dna (56-mer) (17 kDa, DNA from Saccharomyces cerevisiae S288C)
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 6y9v
Q-score: 0.155
Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P
Nat Struct Mol Biol (2020) 27 pp. 855-862 [ Pubmed: 32747784 DOI: doi:10.1038/s41594-020-0467-8 ]
- Hiv-1 capsid (Complex from Human immunodeficiency virus 1)
- Gag-pol polyprotein (24 kDa, Protein from Human immunodeficiency virus 1)
- Peptidyl-prolyl cis-trans isomerase a (17 kDa, Protein from Homo sapiens)
- In vitro assembled hiv-1 capsid in tubular assembly (Complex)
- Cyclophilin a (Complex from Homo sapiens)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6y9w
Q-score: 0.274
Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P
Nat Struct Mol Biol (2020) 27 pp. 855-862 [ Pubmed: 32747784 DOI: doi:10.1038/s41594-020-0467-8 ]
- Hiv-1 capsid (Complex from Human immunodeficiency virus 1)
- Gag-pol polyprotein (24 kDa, Protein from Human immunodeficiency virus 1)
- Peptidyl-prolyl cis-trans isomerase a (17 kDa, Protein from Homo sapiens)
- In vitro assembled hiv-1 capsid in tubular assembly (Complex)
- Cyclophilin a (Complex from Homo sapiens)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6y9x
Q-score: 0.219
Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P
Nat Struct Mol Biol (2020) 27 pp. 855-862 [ Pubmed: 32747784 DOI: doi:10.1038/s41594-020-0467-8 ]
- Hiv-1 capsid (Complex from Human immunodeficiency virus 1)
- Gag-pol polyprotein (24 kDa, Protein from Human immunodeficiency virus 1)
- Peptidyl-prolyl cis-trans isomerase a (17 kDa, Protein from Homo sapiens)
- In vitro assembled hiv-1 capsid in tubular assembly (Complex)
- Cyclophilin a (Complex from Homo sapiens)
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 6y9y
Q-score: 0.171
Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P
Nat Struct Mol Biol (2020) 27 pp. 855-862 [ Pubmed: 32747784 DOI: doi:10.1038/s41594-020-0467-8 ]
- Hiv-1 capsid (Complex from Human immunodeficiency virus 1)
- Gag-pol polyprotein (24 kDa, Protein from Human immunodeficiency virus 1)
- Peptidyl-prolyl cis-trans isomerase a (17 kDa, Protein from Homo sapiens)
- In vitro assembled hiv-1 capsid in tubular assembly (Complex)
- Cyclophilin a (Complex from Homo sapiens)
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 6y9z
Q-score: 0.203
Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P
Nat Struct Mol Biol (2020) 27 pp. 855-862 [ Pubmed: 32747784 DOI: doi:10.1038/s41594-020-0467-8 ]
- Hiv-1 capsid (Complex from Human immunodeficiency virus 1)
- Gag-pol polyprotein (24 kDa, Protein from Human immunodeficiency virus 1)
- Peptidyl-prolyl cis-trans isomerase a (17 kDa, Protein from Homo sapiens)
- In vitro assembled hiv-1 capsid in tubular assembly (Complex)
- Cyclophilin a (Complex from Homo sapiens)