Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8yvy
Q-score: 0.333
To Be Published
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus 4)
- Semliki forest virus viron (Cellular component from Semliki Forest virus 4)
- Spike glycoprotein e3 (5 kDa, Protein from Semliki Forest virus 4)
- Capsid protein (17 kDa, Protein from Semliki Forest virus 4)
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8yvz
Q-score: 0.305
To Be Published
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus 4)
- Capsid protein, partial (17 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e3 (5 kDa, Protein from Semliki Forest virus 4)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Semliki forest virus viron in complex with vldlr-la3 (Cellular component from Semliki Forest virus 4)
- Calcium ion (40 Da, Ligand)
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8yw0
Q-score: 0.225
To Be Published
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus 4)
- Semliki forest virus viron in complex with vldlr-la5 (Cellular component from Semliki Forest virus 4)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus 4)
- Capsid protein, partial (17 kDa, Protein from Semliki Forest virus 4)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Spike glycoprotein e3 (5 kDa, Protein from Semliki Forest virus 4)
- Calcium ion (40 Da, Ligand)
Semliki Forest virus viron in complex with VLDLR
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8yw1
Q-score: 0.437
To Be Published
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus 4)
- Capsid protein, partial (17 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus 4)
- Very low-density lipoprotein receptor (13 kDa, Protein from Homo sapiens)
- Semliki forest virus viron in complex with vldlr-la3-5 (Cellular component from Semliki Forest virus 4)
- Spike glycoprotein e3 (5 kDa, Protein from Semliki Forest virus 4)
Semliki Forest virus viron in complex with VLDLR
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8yw2
Q-score: 0.467
To Be Published
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus 4)
- Capsid protein, partial (17 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus 4)
- Very low-density lipoprotein receptor (17 kDa, Protein from Homo sapiens)
- Spike glycoprotein e3 (5 kDa, Protein from Semliki Forest virus 4)
- Semliki forest viron (Complex from Semliki Forest virus 4)
Structure of Eastern Equine Encephalitis VLP in complex with the receptor VLDLR LA1-2
Cao D, Ma B, Cao Z, Xu X, Zhang X, Xiang Y
Nat Commun (2024) 15 pp. 6866-6866 [ Pubmed: 39127734 DOI: doi:10.1038/s41467-024-51293-x ]
- Very low-density lipoprotein receptor (9 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- Spike glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- East equine encephalitis virus vlp in complex with its receptor vldlr la1-2 at the asymmetric unit (Complex from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- Capsid protein (29 kDa, Protein from Eastern equine encephalitis virus)
Structure of Eastern Equine Encephalitis VLP in complex with the receptor VLDLR LA3-5
Cao D, Ma B, Cao Z, Xu X, Zhang X, Xiang Y
Nat Commun (2024) 15 pp. 6866-6866 [ Pubmed: 39127734 DOI: doi:10.1038/s41467-024-51293-x ]
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- East equine encephalitis virus vlp in complex with its receptor vldlr la3-5 at the asymmetric unit (Complex from Eastern equine encephalitis virus)
- Spike glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- Capsid protein (29 kDa, Protein from Eastern equine encephalitis virus)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
Cryo-EM Structure of Eastern Equine Encephalitis Virus in complex with SKE26 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8dwo
Q-score: 0.483
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Ske26 fab light chain (23 kDa, Protein from Macaca fascicularis)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Envelope glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- Envelope glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- Ske26 fab heavy chain (25 kDa, Protein from Macaca fascicularis)
Cryo-EM Structure of Western Equine Encephalitis Virus
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8dec
Q-score: 0.152
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Western equine encephalitis virus (Virus from Western equine encephalitis virus)
- Spike glycoprotein e1 (47 kDa, Protein from Western equine encephalitis virus)
- Capsid protein (29 kDa, Protein from Western equine encephalitis virus)
- Spike glycoprotein e2 (46 kDa, Protein from Western equine encephalitis virus)
Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW19 fab
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8ded
Q-score: 0.363
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Skw19 fab light chain (23 kDa, Protein from Homo sapiens)
- Skw19 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein e2 (46 kDa, Protein from Western equine encephalitis virus)
- Western equine encephalitis virus (Virus from Western equine encephalitis virus)
- Spike glycoprotein e1 (47 kDa, Protein from Western equine encephalitis virus)