BJOX2000.664 trimer in complex with Fab fragment of broadly neutralizing HIV antibody PGT145
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8jtd
Q-score: 0.211
Hodge EA, Chatterjee A, Chen C, Naika GS, Laohajaratsang M, Mangala Prasad V, Lee KK
Npj Viruses (2023) 1 pp. 2-2 [ Pubmed: 38665238 DOI: doi:10.1038/s44298-023-00002-4 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pgt145 antibody fragment, heavy chain (28 kDa, Protein from Homo sapiens)
- Gp41 protein of hiv envelope trimer (17 kDa, Protein from Human immunodeficiency virus 1)
- Bjox2000.664 trimer in complex with broadly neutralizing hiv antibody pgt145 (Complex from Human immunodeficiency virus 1)
- Gp120 protein of hiv envelope trimer (54 kDa, Protein from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, light chain (23 kDa, Protein from Homo sapiens)
CNE55.664 trimer in complex with broadly neutralizing HIV antibody PGT145
Resolution: 5.14 Å
EM Method: Single-particle
Fitted PDBs: 8jtm
Q-score: 0.166
Hodge EA, Chatterjee A, Chen C, Naika GS, Laohajaratsang M, Mangala Prasad V, Lee KK
Npj Viruses (2023) 1 pp. 2-2 [ Pubmed: 38665238 DOI: doi:10.1038/s44298-023-00002-4 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gp120 protein of hiv envelope trimer (54 kDa, Protein from Human immunodeficiency virus 1)
- Cne55.664 trimer in complex with broadly neutralizing hiv antibody pgt145 (Complex from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, heavy chain (28 kDa, Protein from Homo sapiens)
- Gp41 protein of hiv envelope trimer (17 kDa, Protein from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, light chain (23 kDa, Protein from Homo sapiens)
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8g4m
Q-score: 0.564
Wang S, Matassoli F, Zhang B, Liu T, Shen CH, Bylund T, Johnston T, Henry AR, Teng IT, Tripathi P, Becker JE, Changela A, Chaudhary R, Cheng C, Gaudinski M, Gorman J, Harris DR, Lee M, Morano NC, Novik L, O'Dell S, Olia AS, Parchment DK, Rawi R, Roberts-Torres J, Stephens T, Tsybovsky Y, Wang D, Van Wazer DJ, Zhou T, Doria-Rose NA, Koup RA, Shapiro L, Douek DC, McDermott AB, Kwong PD
Cell Rep (2023) 42 pp. 112755-112755 [ DOI: doi:10.1016/j.celrep.2023.112755 Pubmed: 37436899 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein gp120 (52 kDa, Protein from Human immunodeficiency virus 1)
- Antibody light chain (23 kDa, Protein from Homo sapiens)
- Antibody heavy chain (25 kDa, Protein from Homo sapiens)
- Hiv envelope trimer in complex with three copies of antibody fab (Complex)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8g4t
Q-score: 0.56
Wang S, Matassoli F, Zhang B, Liu T, Shen CH, Bylund T, Johnston T, Henry AR, Teng IT, Tripathi P, Becker JE, Changela A, Chaudhary R, Cheng C, Gaudinski M, Gorman J, Harris DR, Lee M, Morano NC, Novik L, O'Dell S, Olia AS, Parchment DK, Rawi R, Roberts-Torres J, Stephens T, Tsybovsky Y, Wang D, Van Wazer DJ, Zhou T, Doria-Rose NA, Koup RA, Shapiro L, Douek DC, McDermott AB, Kwong PD
Cell Rep (2023) 42 pp. 112755-112755 [ DOI: doi:10.1016/j.celrep.2023.112755 Pubmed: 37436899 ]
- Fab 2c09 light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 2c09 heavy chain (24 kDa, Protein from Homo sapiens)
- Hiv envelope trimer in complex with three copies of antibody fab (Complex)
- Envelope glycoprotein bg505 ds-sosip gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein bg505 ds-sosip gp120 (52 kDa, Protein from Human immunodeficiency virus 1)
HIV-1 Envelope ApexGT2.2MUT in complex with PCT64.LMCA Fab
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7t73
Q-score: 0.388
Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR
Immunity (2022) 55 pp. 2149- [ DOI: doi:10.1016/j.immuni.2022.09.001 Pubmed: 36179689 ]
- Pct64.lmca fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hiv envelope apexgt2.2mut gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 envelope apexgt2.2mut in complex with pct64.lmca fab (Complex from Human immunodeficiency virus 1)
- Hiv envelope apexgt2.2mut gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Pct64.lmca fab heavy chain (25 kDa, Protein from Homo sapiens)
HIV-1 Envelope ApexGT2 in complex with PCT64.35S Fab and RM20A3 Fab
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7t74
Q-score: 0.476
Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR
Immunity (2022) 55 pp. 2149- [ DOI: doi:10.1016/j.immuni.2022.09.001 Pubmed: 36179689 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hiv envelope apexgt2 gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Pct64.35s fab light chain (11 kDa, Protein from Homo sapiens)
- Pct64.35s fab heavy chain (14 kDa, Protein from Homo sapiens)
- Hiv-1 envelope apexgt2 in complex with pct64.35 fab and rm20a3 fab (Complex from Human immunodeficiency virus 1)
- Hiv envelope apexgt2 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Rm20a3 fab heavy chain (13 kDa, Protein from Macaca mulatta)
- Rm20a3 fab light chain (13 kDa, Protein from Macaca mulatta)
HIV-1 Envelope ApexGT2 in complex with RM20A3 Fab
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7t75
Q-score: 0.58
Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR
Immunity (2022) 55 pp. 2149- [ DOI: doi:10.1016/j.immuni.2022.09.001 Pubmed: 36179689 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rm20a3 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Hiv envelope apexgt2 gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 envelope apexgt2 in complex with rm20a3 fab (Complex from Human immunodeficiency virus 1)
- Rm20a3 fab light chain (13 kDa, Protein from Homo sapiens)
- Hiv envelope apexgt2 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
HIV-1 Envelope ApexGT3 in complex with PG9.iGL Fab
Resolution: 4.43 Å
EM Method: Single-particle
Fitted PDBs: 7t76
Q-score: 0.324
Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR
Immunity (2022) 55 pp. 2149- [ DOI: doi:10.1016/j.immuni.2022.09.001 Pubmed: 36179689 ]
- Pg9.igl fab heavy chain (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pg9.igl fab light chain (28 kDa, Protein from Homo sapiens)
- Hiv-1 envelope apexgt3 in complex with pg9.igl fab (Complex from Human immunodeficiency virus 1)
- Hiv envelope apexgt3 gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Hiv envelope apexgt3 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
HIV-1 Envelope ApexGT3.N130 in complex with PG9 Fab
Resolution: 4.75 Å
EM Method: Single-particle
Fitted PDBs: 7t77
Q-score: 0.282
Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR
Immunity (2022) 55 pp. 2149- [ DOI: doi:10.1016/j.immuni.2022.09.001 Pubmed: 36179689 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pg9 fab heavy chain (27 kDa, Protein from Homo sapiens)
- Hiv envelope apexgt3.n130 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 envelope apexgt3.n130 in complex with pg9 fab (Complex from Human immunodeficiency virus 1)
- Pg9 fab light chain (22 kDa, Protein from Homo sapiens)
- Hiv envelope apexgt3.n130 gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
ApexGT2 in complex with GT2-d42.16 and RM20A3 Fabs
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 7t9a
Q-score: 0.456
Melzi E, Willis J, Ma K, Lin Y, Kratochvil S, Berndsen ZT, Nair U, Warner J, Steichen J, Pecetta S, Perez M, Kirsch K, Ward AB, Schief W, Batista FD
Immunity (2022) [ ]
- Hiv-1 envelope apexgt2 in complex with pct64_lmca.hl_gt2_d42.16 fab and rm20a3 fab (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hiv envelope apexgt2 gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Gt2-d42.16 fab heavy chain (15 kDa, Protein from Mus musculus)
- Gt2-d42.16 fab light chain (11 kDa, Protein from Mus musculus)
- Hiv envelope apexgt2 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Rm20a3 fab heavy chain (13 kDa, Protein from Macaca mulatta)
- Rm20a3 fab light chain (13 kDa, Protein from Macaca mulatta)