Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8g4m
Q-score: 0.564
Wang S, Matassoli F, Zhang B, Liu T, Shen CH, Bylund T, Johnston T, Henry AR, Teng IT, Tripathi P, Becker JE, Changela A, Chaudhary R, Cheng C, Gaudinski M, Gorman J, Harris DR, Lee M, Morano NC, Novik L, O'Dell S, Olia AS, Parchment DK, Rawi R, Roberts-Torres J, Stephens T, Tsybovsky Y, Wang D, Van Wazer DJ, Zhou T, Doria-Rose NA, Koup RA, Shapiro L, Douek DC, McDermott AB, Kwong PD
Cell Rep (2023) 42 pp. 112755-112755 [ Pubmed: 37436899 DOI: doi:10.1016/j.celrep.2023.112755 ]
- Hiv envelope trimer in complex with three copies of antibody fab (Complex)
- Antibody light chain (23 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp120 (52 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Antibody heavy chain (25 kDa, Protein from Homo sapiens)
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8g4t
Q-score: 0.56
Wang S, Matassoli F, Zhang B, Liu T, Shen CH, Bylund T, Johnston T, Henry AR, Teng IT, Tripathi P, Becker JE, Changela A, Chaudhary R, Cheng C, Gaudinski M, Gorman J, Harris DR, Lee M, Morano NC, Novik L, O'Dell S, Olia AS, Parchment DK, Rawi R, Roberts-Torres J, Stephens T, Tsybovsky Y, Wang D, Van Wazer DJ, Zhou T, Doria-Rose NA, Koup RA, Shapiro L, Douek DC, McDermott AB, Kwong PD
Cell Rep (2023) 42 pp. 112755-112755 [ Pubmed: 37436899 DOI: doi:10.1016/j.celrep.2023.112755 ]
- Hiv envelope trimer in complex with three copies of antibody fab (Complex)
- Envelope glycoprotein bg505 ds-sosip gp120 (52 kDa, Protein from Human immunodeficiency virus 1)
- Fab 2c09 heavy chain (24 kDa, Protein from Homo sapiens)
- Envelope glycoprotein bg505 ds-sosip gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 2c09 light chain (23 kDa, Protein from Homo sapiens)
ApexGT2 in complex with GT2-d42.16 and RM20A3 Fabs
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 7t9a
Q-score: 0.456
Melzi E, Willis J, Ma K, Lin Y, Kratochvil S, Berndsen ZT, Nair U, Warner J, Steichen J, Pecetta S, Perez M, Kirsch K, Ward AB, Schief W, Batista FD
Immunity (2022) [ ]
- Gt2-d42.16 fab heavy chain (15 kDa, Protein from Mus musculus)
- Gt2-d42.16 fab light chain (11 kDa, Protein from Mus musculus)
- Hiv envelope apexgt2 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Hiv envelope apexgt2 gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 envelope apexgt2 in complex with pct64_lmca.hl_gt2_d42.16 fab and rm20a3 fab (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rm20a3 fab light chain (13 kDa, Protein from Macaca mulatta)
- Rm20a3 fab heavy chain (13 kDa, Protein from Macaca mulatta)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6ulc
Q-score: 0.24
Pan J, Peng H, Chen B, Harrison SC
J Mol Biol (2020) 432 pp. 1158-1168 [ DOI: doi:10.1016/j.jmb.2019.11.028 Pubmed: 31931014 ]
- Envelope glycoprotein gp120,envelope glycoprotein gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hiv-1 gp160 trimer:pg16 fab complex (530 kDa, Complex)
- Antibody pg16 fab (Complex from Homo sapiens)
- Antibody pg16 fab light chain (26 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp41 (40 kDa, Protein from Human immunodeficiency virus 1)
- Antibody pg16 fab heavy chain (31 kDa, Protein from Homo sapiens)
- Hiv envelope glycoprotein gp160 (mature) (Complex from Human immunodeficiency virus 1)