BJOX2000.664 trimer in complex with Fab fragment of broadly neutralizing HIV antibody PGT145
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8jtd
Q-score: 0.211
Hodge EA, Chatterjee A, Chen C, Naika GS, Laohajaratsang M, Mangala Prasad V, Lee KK
Npj Viruses (2023) 1 pp. 2-2 [ Pubmed: 38665238 DOI: doi:10.1038/s44298-023-00002-4 ]
- Bjox2000.664 trimer in complex with broadly neutralizing hiv antibody pgt145 (Complex from Human immunodeficiency virus 1)
- Gp41 protein of hiv envelope trimer (17 kDa, Protein from Human immunodeficiency virus 1)
- Gp120 protein of hiv envelope trimer (54 kDa, Protein from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, heavy chain (28 kDa, Protein from Homo sapiens)
- Pgt145 antibody fragment, light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV-1 Envelope ApexGT2.2MUT in complex with PCT64.LMCA Fab
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7t73
Q-score: 0.388
Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR
Immunity (2022) 55 pp. 2149- [ DOI: doi:10.1016/j.immuni.2022.09.001 Pubmed: 36179689 ]
- Pct64.lmca fab heavy chain (25 kDa, Protein from Homo sapiens)
- Hiv envelope apexgt2.2mut gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Hiv envelope apexgt2.2mut gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Pct64.lmca fab light chain (23 kDa, Protein from Homo sapiens)
- Hiv-1 envelope apexgt2.2mut in complex with pct64.lmca fab (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV-1 Envelope ApexGT3 in complex with PG9.iGL Fab
Resolution: 4.43 Å
EM Method: Single-particle
Fitted PDBs: 7t76
Q-score: 0.324
Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR
Immunity (2022) 55 pp. 2149- [ DOI: doi:10.1016/j.immuni.2022.09.001 Pubmed: 36179689 ]
- Hiv envelope apexgt3 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Pg9.igl fab heavy chain (28 kDa, Protein from Homo sapiens)
- Hiv envelope apexgt3 gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Pg9.igl fab light chain (28 kDa, Protein from Homo sapiens)
- Hiv-1 envelope apexgt3 in complex with pg9.igl fab (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV-1 Envelope ApexGT3.N130 in complex with PG9 Fab
Resolution: 4.75 Å
EM Method: Single-particle
Fitted PDBs: 7t77
Q-score: 0.282
Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR
Immunity (2022) 55 pp. 2149- [ DOI: doi:10.1016/j.immuni.2022.09.001 Pubmed: 36179689 ]
- Hiv envelope apexgt3.n130 gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Pg9 fab heavy chain (27 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pg9 fab light chain (22 kDa, Protein from Homo sapiens)
- Hiv envelope apexgt3.n130 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 envelope apexgt3.n130 in complex with pg9 fab (Complex from Human immunodeficiency virus 1)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6ulc
Q-score: 0.24
Pan J, Peng H, Chen B, Harrison SC
J Mol Biol (2020) 432 pp. 1158-1168 [ DOI: doi:10.1016/j.jmb.2019.11.028 Pubmed: 31931014 ]
- Envelope glycoprotein gp120,envelope glycoprotein gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hiv-1 gp160 trimer:pg16 fab complex (530 kDa, Complex)
- Antibody pg16 fab (Complex from Homo sapiens)
- Antibody pg16 fab light chain (26 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp41 (40 kDa, Protein from Human immunodeficiency virus 1)
- Antibody pg16 fab heavy chain (31 kDa, Protein from Homo sapiens)
- Hiv envelope glycoprotein gp160 (mature) (Complex from Human immunodeficiency virus 1)