human RYBP-PRC1 bound to H2AK118ub1 nucleosome
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8pp6
Q-score: 0.465
Ciapponi M, Karlukova E, Schkolziger S, Benda C, Muller J
Nat Struct Mol Biol (2024) 31 pp. 1023-1027 [ DOI: doi:10.1038/s41594-024-01258-x Pubmed: 38528151 ]
- Dna (215-mer) (76 kDa, DNA from Homo sapiens)
- Human rybp-prc1 bound to h2ak118ub1 nucleosome (Complex from Homo sapiens)
- Ring1 and yy1-binding protein (25 kDa, Protein from Homo sapiens)
- Drosophila octamer (Complex from Drosophila melanogaster)
- Dna (Complex from Homo sapiens)
- Histone h2b (13 kDa, Protein from Drosophila melanogaster)
- Zinc ion (65 Da, Ligand)
- Human rybp (Complex from Homo sapiens)
- Histone h2a (13 kDa, Protein from Drosophila melanogaster)
- Histone h4 (11 kDa, Protein from Drosophila melanogaster)
- Human ubiquitin (Complex from Homo sapiens)
- Dna (215-mer) (76 kDa, DNA from Homo sapiens)
- Histone h3 (fragment) (15 kDa, Protein from Drosophila melanogaster)
- Ubiquitin-40s ribosomal protein s27a (fragment) (8 kDa, Protein from Homo sapiens)
human RYBP-PRC1 bound to mononucleosome
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8pp7
Q-score: 0.511
Ciapponi M, Karlukova E, Schkolziger S, Benda C, Muller J
Nat Struct Mol Biol (2024) 31 pp. 1023-1027 [ DOI: doi:10.1038/s41594-024-01258-x Pubmed: 38528151 ]
- E3 ubiquitin-protein ligase ring2 (38 kDa, Protein from Homo sapiens)
- Drosophila octamer (Complex from Drosophila melanogaster)
- Dna (Complex from Homo sapiens)
- Dna (215-mer) (76 kDa, DNA from Homo sapiens)
- Histone h2b (13 kDa, Protein from Drosophila melanogaster)
- Dna (215-mer) (76 kDa, DNA from Homo sapiens)
- Human rybp-prc1 bound to nucleosome (Complex from Homo sapiens)
- Polycomb complex protein bmi-1 (38 kDa, Protein from Homo sapiens)
- Histone h2a (13 kDa, Protein from Drosophila melanogaster)
- Histone h4 (11 kDa, Protein from Drosophila melanogaster)
- Zinc ion (65 Da, Ligand)
- Histone h3 (fragment) (15 kDa, Protein from Drosophila melanogaster)
- Ring1b:bmi1 heterodimer (Complex from Homo sapiens)
Histone H3 recognition by nucleosome-bound PRC2 subunit EZH2.
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7at8
Q-score: 0.29
Finogenova K, Bonnet J, Poepsel S, Schafer IB, Finkl K, Schmid K, Litz C, Strauss M, Benda C, Muller J
eLife (2020) 9 [ Pubmed: 33211010 DOI: doi:10.7554/eLife.61964 ]
- Widom601 dna plus linker (47 kDa, DNA from synthetic construct)
- Polycomb protein suz12 (83 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Isoform 2 of histone-lysine n-methyltransferase ezh2,isoform 2 of histone-lysine n-methyltransferase ezh2,histone-lysine n-methyltransferase ezh2,isoform 2 of histone-lysine n-methyltransferase ezh2,isoform 2 of histone-lysine n-methyltransferase ezh2 (87 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (Complex from synthetic construct)
- Em map of ezh2 on nucleosome obtained from signal particle subtraction and focused refinement on phf1-prc2:dinucleosome map. (Complex)
- Widom601 dna plus linker (48 kDa, DNA from synthetic construct)
- Histones (Complex from Xenopus laevis)
- Suz12 and ezh2 (Complex from Homo sapiens)
Cryo-EM map of PHF1-PRC2 on a heterodimeric dinucleosome.
Finogenova K, Bonnet J, Poepsel S, Schafer IB, Finkl K, Schmid K, Litz C, Strauss M, Benda C, Muller J
eLife (2020) 9 [ Pubmed: 33211010 DOI: doi:10.7554/eLife.61964 ]
- Cryo-em map of phf1-prc2 on a heterodimeric dinucleosome (Complex)
- Widom601 dna + linker (Complex from synthetic construct)
- Polycomb protein eed (Protein from Homo sapiens)
- Polycomb protein suz12 (Protein from Homo sapiens)
- Histone h2b (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- Histones (Complex from Xenopus laevis)
- Histone-lysine n-methyltransferase ezh2 (Protein from Homo sapiens)
- Histone h3.2 (Protein from Xenopus laevis)
- Widom601 dna + linker (RNA from synthetic construct)
- Histone-lysine n-methyltransferase ezh2, polycomb protein eed, polycomb protein suz12 (Complex from Homo sapiens)
- Histone h2a (Protein from Xenopus laevis)