Structural basis for the nucleosome binding and chromatin compaction by the linker histone H5
Structural basis for the nucleosome binding and chromatin compaction by the linker histone H5
Structural basis for the linker histone H5-nucleosome binding and chromatin compaction
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8xjv
Q-score: 0.424
Li W, Hu J, Song F, Yu J, Peng X, Zhang S, Wang L, Hu M, Liu JC, Wei Y, Xiao X, Li Y, Li D, Wang H, Zhou BR, Dai L, Mou Z, Zhou M, Zhang H, Zhou Z, Zhang H, Bai Y, Zhou JQ, Li W, Li G, Zhu P
Cell Res (2024) 34 pp. 707-724 [ DOI: doi:10.1038/s41422-024-01009-z Pubmed: 39103524 ]
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b (Complex from Xenopus laevis)
- Linker histone h5 (Complex from Gallus gallus)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h5 (21 kDa, Protein from Gallus gallus)
- Dna (660 kDa, DNA from synthetic construct)
- 12x177bp-h5 chromatin (Complex)
- Dna (651 kDa, DNA from synthetic construct)
- Histone h3.1 (Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Widom 601 dna (Complex from synthetic construct)
- Histone h2a (Complex from Xenopus laevis)
Cryo-EM structure of the monomeric human CAF1LC-H3-H4 complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7y5u
Q-score: 0.345
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Monomeric caf1l-h3-h4 complex (168 kDa, Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit b (46 kDa, Protein from Homo sapiens)
- Caf1l/rbbp4/chromatin assembly factor 1 subunit b (Complex from Homo sapiens)
- Chromatin assembly factor 1 subunit a (47 kDa, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- H3-h4 (Complex)
Cryo-EM structure of the dimeric human CAF1LC-H3-H4 complex
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 7y5v
Q-score: 0.222
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Dimeric caf1lc-h3-h4 complex (336 kDa, Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Caf1lc/rbbp4 (Complex from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit b (46 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit a (47 kDa, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- H3-h4 (Complex)
Cryo-EM structure of the left-handed Di-tetrasome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7y5w
Q-score: 0.35
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- A left-handed di-tetrasome (Complex from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (Complex)
- H3-h4 (Complex)
Cryo-EM structure of human CAF1LC bound right-handed Di-tetrasome
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7y60
Q-score: 0.304
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit b (46 kDa, Protein from Homo sapiens)
- The caf1lc bound right-handed di-tetrasome (Complex from Homo sapiens)
- Chromatin assembly factor 1 subunit a (47 kDa, Protein from Homo sapiens)
Cryo-EM structure of the two CAF1LCs bound right-handed Di-tetrasome
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 7y61
Q-score: 0.189
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Dna (Complex from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit b (46 kDa, Protein from Homo sapiens)
- Histone h4/h3.1 (Complex)
- Two caf1lcs bound right-handed di-tetrasome (Complex from Homo sapiens)
- Chromatin assembly factor 1 subunit a/b (Complex)
- Chromatin assembly factor 1 subunit a (47 kDa, Protein from Homo sapiens)
Composite cryo-EM density map of the dimeric human CAF1-H3-H4 complex
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 8iqf
Q-score: 0.298
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit a (107 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dimeric caf1-h3-h4 complex (486 kDa, Complex from Homo sapiens)
- Chromatin assembly factor 1 subunit b (61 kDa, Protein from Homo sapiens)
- Caf-1fl complex (Complex from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- H3-h4 (Complex)
Cryo-EM structure of the monomeric human CAF1-H3-H4 complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8iqg
Q-score: 0.429
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Monomeric caf1-h3-h4 complex (168 kDa, Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit b (61 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit a (107 kDa, Protein from Homo sapiens)
- Caf-1 complex (Complex from Homo sapiens)
- H3-h4 (Complex)