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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"HIstone" AND xref_links:"pdb" AND resolution:[20 TO 30}

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EMD-10446

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SAGA-TBP filtered to show the position of the DUB domain

Release date: Feb. 12, 2020
Resolution: 20.0 Å
EM Method: Single-particle
Fitted PDBs: 6tbm
Q-score: 0.08

Papai G, Frechard A, Kolesnikova O, Crucifix C, Schultz P, Ben-Shem A

Nature (2020) 577 pp. 711-716 [ DOI: doi:10.1038/s41586-020-1944-2 Pubmed: 31969704 ]

Sample:

Tata-box binding protein (tbp) (Complex from Komagataella phaffii GS115)
Polyubiquitin-b (8 kDa, Protein from Homo sapiens)
Tata-box binding protein (tbp) (27 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Transcription and mrna export factor sus1 (11 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Transcription initiation factor tfiid subunit 10 (23 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Saga component (Complex from Komagataella phaffii GS115)
Saga complex (Complex from Komagataella phaffii GS115)
Transcriptional regulator involved in glucose repression of gal4p-regulated genes (81 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Ubiquitin carboxyl-terminal hydrolase (56 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Subunit of the saga and saga-like transcriptional regulatory complexes, interacts with spt15p to act (39 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Subunit of the saga transcriptional regulatory complex, involved in proper assembly of the complex (136 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Spt8 (34 kDa, Protein from Komagataella phaffii GS115)
Spt20 (59 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Subunit (60 kda) of tfiid and saga complexes (54 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Subunit (90 kda) of tfiid and saga complexes (80 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Transcriptional coactivator hfi1/ada1 (49 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Subunit (61/68 kda) of tfiid and saga complexes (66 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Polyubiquitin-b (Complex from Homo sapiens)
Water (18 Da, Ligand)
Saga bound to tbp (1 MDa, Complex)
Saga-associated factor 11 (13 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Subunit of saga histone acetyltransferase complex (79 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Transcription-associated protein (438 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))
Subunit (17 kda) of tfiid and saga complexes, involved in rna polymerase ii transcription initiation (17 kDa, Protein from Komagataella phaffii (strain GS115 / ATCC 20864))

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EMD-21114

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Release date: Jan. 15, 2020
Resolution: 20.0 Å
EM Method: Single-particle
Fitted PDBs: 6v92
Q-score: 0.053

Patel AB, Moore CM, Greber BJ, Luo J, Zukin SA, Ranish J, Nogales E

eLife (2019) 8 [ Pubmed: 31886770 DOI: doi:10.7554/eLife.54449 ]

Sample:

Unknown protein (1 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex protein rsc6 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nuclear protein sth1/nps1 (156 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex protein rsc58 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex subunit rsc9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Regulator of ty1 transposition protein 102 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Unknown protein (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex protein rsc3 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Unknown protein (1 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Histone h3.1 (15 kDa, Protein from Homo sapiens)
Chromatin structure-remodeling complex subunit rsc7 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex subunit rsc4 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex protein rsc8 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
Uuknown protein (1 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex subunit sfh1 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rsc-ncp complex (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
High temperature lethal protein 1 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex protein rsc30 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Histone h4 (11 kDa, Protein from Homo sapiens)
Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Chromatin structure-remodeling complex subunit rsc2 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Chromatin structure-remodeling complex protein rsc14 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
Actin-related protein 7 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Unknown protein (2 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna (146-mer) (45 kDa, DNA from synthetic construct)

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EMD-1469

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Iterative Helical Real Space Reconstruction of Histone Octamer Helical Tubes

Release date: April 20, 2009
Resolution: 20.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 3c9k
Q-score: 0.019

Frouws TD, Patterton HG, Sewell BT

Biophys J (2009) 96 pp. 3363-3371 [ Pubmed: 19383479 DOI: doi:10.1016/j.bpj.2008.10.075 ]

Sample:

Histone h4 (11 kDa, Protein from Gallus gallus)
Histone h3 (15 kDa, Protein from Gallus gallus)
Histone h2a (14 kDa, Protein from Gallus gallus)
Histone h2b (14 kDa, Protein from Gallus gallus)
Histone octamer tubular crystals (109 kDa, Sample)

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