Uncrosslinked VRK1-nucleosome complex
Budziszewski GR, Zhao Y, Spangler CJ, Kedziora KM, Williams MR, Azzam DN, Skrajna A, Koyama Y, Cesmat AP, Simmons HC, Arteaga EC, Strauss JD, Kireev D, McGinty RK
Nucleic Acids Res (2022) 50 pp. 4355-4371 [ Pubmed: 35390161 DOI: doi:10.1093/nar/gkac198 ]
- Histone h3.2 (Protein from Homo sapiens)
- Structure of vrk1 c-terminal tail bound to nucleosome core particle (Complex)
- Widom 601 dna (185-mer) (DNA from synthetic construct)
- Vaccinia-related kinase 1 (Protein from Homo sapiens)
- Histone h3.2, histone h4, histone h2a type 1, histone h2b type 1-c/e/f/g/i, serine/threonine-protein kinase vrk1 (Complex from Homo sapiens)
- Histone h2a (Protein from Homo sapiens)
- Histone h4 (Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Histone h2b (Protein from Homo sapiens)
H2A.Z Dodecanucleosome 30 nm Fiber
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ Pubmed: 34643712 DOI: doi:10.1093/nar/gkab907 ]
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b (Complex from Xenopus laevis)
- Histone h2a.z (Complex from Mus musculus)
- Histone h3 (Protein from Xenopus laevis)
- 12 tandem repeats of 167 bp of 601 windom nucleosome-positioning sequence (DNA from unidentified)
- 12 tandem repeats of 167 bp of 601 windom nucleosome-positioning sequence (Complex from unidentified)
- Histone h2b (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- In vitro reconstituted 12x167 bp chromatin (Complex from Xenopus laevis)
- Histone h3 (Complex from Xenopus laevis)
- Histone h2a.z (Protein from Mus musculus)
cryo-EM density map of chromatin fiber containing canonical histones and 167-bp 601 DNA
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ Pubmed: 34643712 DOI: doi:10.1093/nar/gkab907 ]
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b (Complex from Xenopus laevis)
- Histone h3 (Protein from Xenopus laevis)
- 12x167bp 601 dna (Complex from unidentified)
- Histone h2b (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- 12x 167bp 601 dna (DNA from unidentified)
- Histones h2a (Complex from Xenopus laevis)
- In-vitro reconstituted chromatin fiber containing canonical histones and twelve tandem repeats of 167-bp 601 windom sequence (Complex from Xenopus laevis)
- Histone h3 (Complex from Xenopus laevis)
- Histone h2a (Protein from Xenopus laevis)
cryo-EM density map of canonical nucleosome
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ Pubmed: 34643712 DOI: doi:10.1093/nar/gkab907 ]
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b (Complex from Xenopus laevis)
- 167-bp 601 widom dna sequence (DNA from unidentified)
- Histone h3 (Protein from Xenopus laevis)
- Histone h2b (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- Histones h2a (Complex from Xenopus laevis)
- 167-bp 601 widom dna sequence (Complex from unidentified)
- Nucleosome containing canonical histones h2a, h2b, h3 and h4 (Complex from Xenopus laevis)
- Histone h3 (Complex from Xenopus laevis)
- Histone h2a (Protein from Xenopus laevis)
cryoDRGN graph traversal of the ALC1 - PARylated nucleosome complex particle distribution
Bacic L, Gaullier G, Sabantsev A, Lehmann LC, Brackmann K, Dimakou D, Halic M, Hewitt G, Boulton S, Deindl S
eLife (2021) 10 [ Pubmed: 34486521 DOI: doi:10.7554/eLife.71420 ]
- Alc1/chd1l (Complex from Homo sapiens)
- Alc1/chd1l (Protein from Homo sapiens)
- Histone h3 (Protein from Xenopus laevis)
- Widom 601 sequence (DNA from synthetic construct)
- Histone h2b (Protein from Xenopus laevis)
- Alc1/chd1l bound to a parylated nucleosome (305 kDa, Complex)
- Histone h4 (Protein from Xenopus laevis)
- Widom 601 sequence (Complex from synthetic construct)
- Histone (Complex from Xenopus laevis)
- Histone h2a (Protein from Xenopus laevis)
Franco A, Arranz R, Fernandez-Rivero N, Velazquez-Campoy A, Martin-Benito J, Segura J, Prado A, Valpuesta JM, Muga A
Sci Rep (2019) 9 pp. 9487-9487 [ Pubmed: 31263230 DOI: doi:10.1038/s41598-019-45726-7 ]
- Nucleoplasmin-histone octamer complex (320 kDa, Complex)
- Nucleoplasmin (Protein from Xenopus laevis)
- Histone h3 (Protein from Gallus gallus)
- Histone h4 (Protein from Gallus gallus)
- Histone h2a (Protein from Gallus gallus)
- Histone h2b (Protein from Gallus gallus)
- Nucleoplasmin (Complex from Xenopus laevis)
- Histones (Complex from Gallus gallus)
Cryo-EM structure of CENP-A nucleosome complexed with CENP-LN
Tian T, Li X, Liu Y, Wang C, Liu X, Bi G, Zhang X, Yao X, Zhou ZH, Zang J
Cell Res (2018) 28 pp. 374-378 [ Pubmed: 29350209 DOI: doi:10.1038/cr.2018.13 ]
- Cenp-nl complex (Complex)
- Cenp-a ncp (Complex)
- Cenp-a ncp/cenp-ln complex (Complex from Homo sapiens)
- Histone h2a (Protein from Homo sapiens)
- Histone h4 (Protein from Homo sapiens)
- Dna (147-mer) (DNA from Homo sapiens)
- Histone h3-like centromeric protein a (cenp-a) (Protein from Homo sapiens)
- Histone h2b (Protein from Homo sapiens)
- Centromere protein l (cenp-l) (Protein from Homo sapiens)
- Centromere protein n (cenp-n) (Protein from Homo sapiens)