REEL analysis reconstructions of lumbricus terrestris erythrocruorin (worm hemoglobin)
Pfeil-Gardiner O, Rosa HVD, Riedel D, Chen YS, Lorks D, Kukelhan P, Linck M, Muller H, Van Petegem F, Murphy BJ
Nat Methods (2024) 21 pp. 2299-2306 [ DOI: doi:10.1038/s41592-024-02482-5 Pubmed: 39448878 ]
Human methemoglobin bound to Staphylococcus aureus hemophore IsdB
Resolution: 5.82 Å
EM Method: Single-particle
Fitted PDBs: 7pcf
Q-score: 0.246
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Human methemoglobin bound to staphylococcus aureus hemophore isdb (119 kDa, Complex)
- Hemoglobin (Complex from Homo sapiens)
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:2 complex
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7pch
Q-score: 0.491
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Hemoglobin (Complex from Homo sapiens)
- Water (18 Da, Ligand)
- Human carboxyhemoglobin bound to staphylococcus aureus hemophore isdb - 1:2 complex (151 kDa, Complex)
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:1 complex
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7pcq
Q-score: 0.322
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Human carboxyhemoglobin bound to staphylococcus aureus hemophore isdb - 1:1 complex (108 kDa, Complex)
- Hemoglobin (Complex from Homo sapiens)
3.6 A structure of the human hemoglobin
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7vde
Q-score: 0.448
Fan H, Wang B, Zhang Y, Zhu Y, Song B, Xu H, Zhai Y, Qiao M, Sun F
Nat Commun (2021) 12 pp. 7257-7257 [ DOI: doi:10.1038/s41467-021-27596-8 Pubmed: 34907237 ]
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Human hemoglobin (64 kDa, Complex from Homo sapiens)
Mouche F, Boisset N, Penczek PA
J Struct Biol (2001) 133 pp. 176-192 [ DOI: doi:10.1006/jsbi.2001.4362 Pubmed: 11472089 ]
- Lumbricus terrestris hemoglobin (3 MDa, Protein from Lumbricus terrestris)
- Lumbricus terrestris hemoglobin (3 MDa, Sample)