Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 9fno
Q-score: 0.203
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Scavenger receptor cysteine-rich type 1 protein m130 (125 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemopressin (15 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Isoform 2 of haptoglobin alpha chain (9 kDa, Protein from Homo sapiens)
- Spinorphin (16 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex from Homo sapiens)
- Haptoglobin beta chain (27 kDa, Protein from Homo sapiens)
Cryo-EM structure of human CD163 SRCR2-4 in complex with haptoglobin-hemoglobin
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 9fhb
Q-score: 0.405
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Cd163 (Complex from Homo sapiens)
- Scavenger receptor cysteine-rich type 1 protein m130 (125 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex)
- Haptoglobin (45 kDa, Protein from Homo sapiens)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Haptoglobin-hemoglobin complex (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Resolution: 4.46 Å
EM Method: Single-particle
Fitted PDBs: 9fmu
Q-score: 0.233
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Isoform 2 of haptoglobin (38 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemopressin (15 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Scavenger receptor cysteine-rich type 1 protein m130 (112 kDa, Protein from Homo sapiens)
- Spinorphin (16 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex from Homo sapiens)
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:2 complex
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7pch
Q-score: 0.491
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Water (18 Da, Ligand)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Human carboxyhemoglobin bound to staphylococcus aureus hemophore isdb - 1:2 complex (151 kDa, Complex)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin (Complex from Homo sapiens)
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:1 complex
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7pcq
Q-score: 0.322
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Human carboxyhemoglobin bound to staphylococcus aureus hemophore isdb - 1:1 complex (108 kDa, Complex)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin (Complex from Homo sapiens)