Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 9fno
Q-score: 0.203
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Scavenger receptor cysteine-rich type 1 protein m130 (125 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemopressin (15 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Isoform 2 of haptoglobin alpha chain (9 kDa, Protein from Homo sapiens)
- Spinorphin (16 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex from Homo sapiens)
- Haptoglobin beta chain (27 kDa, Protein from Homo sapiens)
Cryo-EM structure of human CD163 SRCR2-4 in complex with haptoglobin-hemoglobin
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 9fhb
Q-score: 0.405
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Cd163 (Complex from Homo sapiens)
- Scavenger receptor cysteine-rich type 1 protein m130 (125 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex)
- Haptoglobin (45 kDa, Protein from Homo sapiens)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Haptoglobin-hemoglobin complex (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Resolution: 4.46 Å
EM Method: Single-particle
Fitted PDBs: 9fmu
Q-score: 0.233
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Isoform 2 of haptoglobin (38 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemopressin (15 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Scavenger receptor cysteine-rich type 1 protein m130 (112 kDa, Protein from Homo sapiens)
- Spinorphin (16 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex from Homo sapiens)
cryo-EM structure of alligator haemoglobin in carbonmonoxy form
Takahashi K, Lee Y, Fago A, Bautista NM, Storz JF, Kawamoto A, Kurisu G, Nishizawa T, Tame JRH
Nat Commun (2024) 15 pp. 6505-6505 [ Pubmed: 39090102 DOI: doi:10.1038/s41467-024-49947-x ]
- Carbon monoxide (28 Da, Ligand)
- Water (18 Da, Ligand)
- Hemoglobin subunit beta (16 kDa, Protein from Alligator mississippiensis)
- Alligator haemoglobin in carbonmonoxy form (100 kDa, Complex from Alligator mississippiensis)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Hemoglobin subunit alpha (15 kDa, Protein from Alligator mississippiensis)
cryo-EM structure of alligator haemoglobin in oxy form
Takahashi K, Lee Y, Fago A, Bautista NM, Storz JF, Kawamoto A, Kurisu G, Nishizawa T, Tame JRH
Nat Commun (2024) 15 pp. 6505-6505 [ Pubmed: 39090102 DOI: doi:10.1038/s41467-024-49947-x ]
- Water (18 Da, Ligand)
- Alligator haemoglobin in carboxy form (100 kDa, Complex from Alligator mississippiensis)
- Oxygen molecule (31 Da, Ligand)
- Hemoglobin subunit beta (16 kDa, Protein from Alligator mississippiensis)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Hemoglobin subunit alpha (15 kDa, Protein from Alligator mississippiensis)
cryo-EM structure of alligator haemoglobin in deoxy form
Takahashi K, Lee Y, Fago A, Bautista NM, Storz JF, Kawamoto A, Kurisu G, Nishizawa T, Tame JRH
Nat Commun (2024) 15 pp. 6505-6505 [ Pubmed: 39090102 DOI: doi:10.1038/s41467-024-49947-x ]
- Water (18 Da, Ligand)
- Alligator haemoglobin in carboxy form (100 kDa, Complex from Alligator mississippiensis)
- Hemoglobin subunit beta (16 kDa, Protein from Alligator mississippiensis)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Hemoglobin subunit alpha (15 kDa, Protein from Alligator mississippiensis)
cryo-EM structure of human haemoglobin in carbonmonoxy form
Takahashi K, Lee Y, Fago A, Bautista NM, Storz JF, Kawamoto A, Kurisu G, Nishizawa T, Tame JRH
Nat Commun (2024) 15 pp. 6505-6505 [ Pubmed: 39090102 DOI: doi:10.1038/s41467-024-49947-x ]
- Carbon monoxide (28 Da, Ligand)
- Water (18 Da, Ligand)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Human haemoglobin in carbonmonoxy form (100 kDa, Complex from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
cryo-EM structure of human haemoglobin in oxy form
Takahashi K, Lee Y, Fago A, Bautista NM, Storz JF, Kawamoto A, Kurisu G, Nishizawa T, Tame JRH
Nat Commun (2024) 15 pp. 6505-6505 [ Pubmed: 39090102 DOI: doi:10.1038/s41467-024-49947-x ]
- Water (18 Da, Ligand)
- Oxygen molecule (31 Da, Ligand)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Human haemoglobin in oxy form (100 kDa, Complex from Homo sapiens)
cryo-EM structure of human haemoglobin in deoxy form
Takahashi K, Lee Y, Fago A, Bautista NM, Storz JF, Kawamoto A, Kurisu G, Nishizawa T, Tame JRH
Nat Commun (2024) 15 pp. 6505-6505 [ Pubmed: 39090102 DOI: doi:10.1038/s41467-024-49947-x ]
- Water (18 Da, Ligand)
- Human haemoglobin in deoxy form (100 kDa, Complex from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)