Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 9fno
Q-score: 0.203
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Scavenger receptor cysteine-rich type 1 protein m130 (125 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemopressin (15 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Isoform 2 of haptoglobin alpha chain (9 kDa, Protein from Homo sapiens)
- Spinorphin (16 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex from Homo sapiens)
- Haptoglobin beta chain (27 kDa, Protein from Homo sapiens)
Cryo-EM structure of human CD163 SRCR2-4 in complex with haptoglobin-hemoglobin
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 9fhb
Q-score: 0.405
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Cd163 (Complex from Homo sapiens)
- Scavenger receptor cysteine-rich type 1 protein m130 (125 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex)
- Haptoglobin (45 kDa, Protein from Homo sapiens)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Haptoglobin-hemoglobin complex (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Resolution: 4.46 Å
EM Method: Single-particle
Fitted PDBs: 9fmu
Q-score: 0.233
Etzerodt A, Mikkelsen JH, Torvund-Jensen M, Hennig D, Boesen T, Graversen JH, Moestrup SK, Kollman JM, Andersen CBF
Nat Commun (2024) 15 pp. 10871-10871 [ DOI: doi:10.1038/s41467-024-55171-4 Pubmed: 39738064 ]
- Isoform 2 of haptoglobin (38 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemopressin (15 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Scavenger receptor cysteine-rich type 1 protein m130 (112 kDa, Protein from Homo sapiens)
- Spinorphin (16 kDa, Protein from Homo sapiens)
- Cd163 in complex with haptoglobin-hemoglobin (Complex from Homo sapiens)
cryo-EM structure of human haemoglobin in oxy form
Takahashi K, Lee Y, Fago A, Bautista NM, Storz JF, Kawamoto A, Kurisu G, Nishizawa T, Tame JRH
Nat Commun (2024) 15 pp. 6505-6505 [ Pubmed: 39090102 DOI: doi:10.1038/s41467-024-49947-x ]
- Water (18 Da, Ligand)
- Oxygen molecule (31 Da, Ligand)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Human haemoglobin in oxy form (100 kDa, Complex from Homo sapiens)
cryo-EM structure of human haemoglobin in deoxy form
Takahashi K, Lee Y, Fago A, Bautista NM, Storz JF, Kawamoto A, Kurisu G, Nishizawa T, Tame JRH
Nat Commun (2024) 15 pp. 6505-6505 [ Pubmed: 39090102 DOI: doi:10.1038/s41467-024-49947-x ]
- Water (18 Da, Ligand)
- Human haemoglobin in deoxy form (100 kDa, Complex from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Hemoglobin subunit beta (16 kDa, Protein from Homo sapiens)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:2 complex
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7pch
Q-score: 0.491
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Water (18 Da, Ligand)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Human carboxyhemoglobin bound to staphylococcus aureus hemophore isdb - 1:2 complex (151 kDa, Complex)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin (Complex from Homo sapiens)
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:1 complex
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7pcq
Q-score: 0.322
De Bei O, Marchetti M, Ronda L, Gianquinto E, Lazzarato L, Chirgadze DY, Hardwick SW, Cooper LR, Spyrakis F, Luisi BF, Campanini B, Bettati S
PNAS (2022) 119 pp. e2116708119-e2116708119 [ Pubmed: 35357971 DOI: doi:10.1073/pnas.2116708119 ]
- Human carboxyhemoglobin bound to staphylococcus aureus hemophore isdb - 1:1 complex (108 kDa, Complex)
- Hemoglobin subunit alpha (15 kDa, Protein from Homo sapiens)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Iron-regulated surface determinant protein b (43 kDa, Protein from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin subunit beta (15 kDa, Protein from Homo sapiens)
- Iron-regulated surface determinant protein b (Complex from Staphylococcus aureus subsp. aureus MW2)
- Hemoglobin (Complex from Homo sapiens)