structure of the K9me3-H2A.Z nucleosome
To Be Published
- Widom601 (208bp) strand1 (DNA from synthetic construct)
- Widom601 (208bp) strand2 (DNA from synthetic construct)
- Histone h4 (Protein from Xenopus laevis)
- Hp1alpha dimer bound to h2a.z nucleosome (288 MDa, Complex from Escherichia coli)
- Histone h2b (Protein from Xenopus laevis)
- Histone h2a.z (Protein from Mus musculus)
- Histone h3, k9me3 (Protein from Xenopus laevis)
Structure of Heterochromatin Protein 1 (HP1) alpha in complex with an H2A.Z nucleosome
Resolution: 6.3 Å
EM Method: Single-particle
Fitted PDBs: 8uxq
Q-score: 0.143
To Be Published
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a.z (13 kDa, Protein from Mus musculus)
- Chromobox protein homolog 5 (22 kDa, Protein from Homo sapiens)
- Hp1alpha dimer bound to h2a.z nucleosome (288 kDa, Complex from Escherichia coli)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna widom601 (208bp) strand2 (63 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna widom601 (208bp) strand1 (64 kDa, DNA from synthetic construct)
The cryo-EM structure of the H2A.Z-H3.3 double-variant nucleosome
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9b3p
Q-score: 0.455
Jung H, Sokolova V, Lee G, Stevens VR, Tan D
Epigenomes (2024) 8 [ DOI: doi:10.3390/epigenomes8020021 Pubmed: 38920622 ]
- Histone h3.3 (15 kDa, Protein from Homo sapiens)
- Dna (128-mer) (45 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Nucleosome containing histone variants h3.3 and h2a.z (288 kDa, Complex from Escherichia coli)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a.z (13 kDa, Protein from Mus musculus)
- Dna (128-mer) (51 kDa, DNA from synthetic construct)
cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7m1x
Q-score: 0.391
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ DOI: doi:10.1093/nar/gkab907 Pubmed: 34643712 ]
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone variant h2a.z (Complex from Mus musculus)
- Nucleosome core particle containing variant h2a.z and canonical core histones (Complex)
- Histone h4 (Complex from Xenopus laevis)
- Histone h3 (Complex from Xenopus laevis)
- Dna (136-mer) (45 kDa, DNA from unidentified)
- Dna (136-mer) (Complex from unidentified)
- Dna (136-mer) (45 kDa, DNA from unidentified)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2b (Complex from Xenopus laevis)
- Histone h2a.z (13 kDa, Protein from Mus musculus)
H2A.Z Dodecanucleosome 30 nm Fiber
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ DOI: doi:10.1093/nar/gkab907 Pubmed: 34643712 ]
- Histone h2a.z (Complex from Mus musculus)
- In vitro reconstituted 12x167 bp chromatin (Complex from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b (Protein from Xenopus laevis)
- Histone h3 (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- Histone h2a.z (Protein from Mus musculus)
- Histone h3 (Complex from Xenopus laevis)
- 12 tandem repeats of 167 bp of 601 windom nucleosome-positioning sequence (Complex from unidentified)
- Histone h2b (Complex from Xenopus laevis)
- 12 tandem repeats of 167 bp of 601 windom nucleosome-positioning sequence (DNA from unidentified)
cryo-EM density map of chromatin fiber containing canonical histones and 167-bp 601 DNA
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ DOI: doi:10.1093/nar/gkab907 Pubmed: 34643712 ]
- Histone h3 (Protein from Xenopus laevis)
- Histones h2a (Complex from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- Histone h3 (Complex from Xenopus laevis)
- Histone h2a (Protein from Xenopus laevis)
- 12x167bp 601 dna (Complex from unidentified)
- In-vitro reconstituted chromatin fiber containing canonical histones and twelve tandem repeats of 167-bp 601 windom sequence (Complex from Xenopus laevis)
- Histone h2b (Complex from Xenopus laevis)
- 12x 167bp 601 dna (DNA from unidentified)
cryo-EM density map of canonical nucleosome
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ DOI: doi:10.1093/nar/gkab907 Pubmed: 34643712 ]
- Nucleosome containing canonical histones h2a, h2b, h3 and h4 (Complex from Xenopus laevis)
- Histone h3 (Protein from Xenopus laevis)
- Histones h2a (Complex from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- Histone h2b (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- Histone h3 (Complex from Xenopus laevis)
- Histone h2a (Protein from Xenopus laevis)
- 167-bp 601 widom dna sequence (DNA from unidentified)
- Histone h2b (Complex from Xenopus laevis)
- 167-bp 601 widom dna sequence (Complex from unidentified)