ncPRC1RYBP bound to symmetric H2AK119Ub dinucleosome
Lopez VG, Valencia-Sanchez MI, Abini-Agbomson S, Thomas JF, Lee R, De Ioannes P, Sosa BA, Armache JP, Armache KJ
Nature (2024) 636 pp. 755-761 [ DOI: doi:10.1038/s41586-024-08183-5 Pubmed: 39537923 ]
- Histone h2b 1.1 (Protein from Xenopus laevis)
- Histone h3.2 (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- Ubiquitin (Protein)
- E3 ubiquitin-protein ligase ring2, ubiquitin-conjugating enzyme e2 d3 (Protein)
- Dna (309-mer) (DNA from synthetic construct)
- Polycomb complex protein bmi-1 (Protein)
- Ring1 and yy1-binding protein (Protein)
- Histone h2a (Protein from Xenopus laevis)
- Ncprc1rybp bound to symmetric h2ak119ub dinucleosome (Complex from Homo sapiens)
The 4x177 nucleosome array containing H1
Resolution: 9.5 Å
EM Method: Single-particle
Fitted PDBs: 7pet
Q-score: 0.105
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Tetranucleosome from 4x177 nucleosome array (Complex)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Dna (702-mer) (218 kDa, DNA from synthetic construct)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Dna (702-mer) (215 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Trinucleosome of the 4x177 nucleosome array containing H1
Resolution: 11.0 Å
EM Method: Single-particle
Fitted PDBs: 7pf0
Q-score: 0.101
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Histones (Complex from Homo sapiens)
- Dna (563-mer) (167 kDa, DNA from synthetic construct)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Trinucleosome from 4x187 nucleosome array (Complex)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Dna (563-mer) (166 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Trinucleosome of the 4x197 nucleosome array containing H1
Resolution: 9.7 Å
EM Method: Single-particle
Fitted PDBs: 7pfa
Q-score: 0.084
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Dna (561-mer) (242 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Dna (561-mer) (244 kDa, DNA from synthetic construct)
- Trinucleosome from 4x197 array (Complex)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Trinucleosome of the 4x207 nucleosome array containing H1
Resolution: 9.8 Å
EM Method: Single-particle
Fitted PDBs: 7pft
Q-score: 0.109
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Dna (591-mer) (181 kDa, DNA from synthetic construct)
- Trinucleosome from 4x207 nucleosome array (Complex)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Dna (591-mer) (183 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7v9j
Q-score: 0.107
Soman A, Wong SY, Korolev N, Surya W, Lattmann S, Vogirala VK, Chen Q, Berezhnoy NV, van Noort J, Rhodes D, Nordenskiold L
Nature (2022) 609 pp. 1048-1055 [ DOI: doi:10.1038/s41586-022-05236-5 Pubmed: 36104563 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Dna (408-mer) (122 kDa, DNA from Homo sapiens)
- Dna (408-mer) (129 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2b type 1-k (11 kDa, Protein from Homo sapiens)
- Telomeric mononucleosome (Complex from Homo sapiens)
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 7v9k
Q-score: 0.076
Soman A, Wong SY, Korolev N, Surya W, Lattmann S, Vogirala VK, Chen Q, Berezhnoy NV, van Noort J, Rhodes D, Nordenskiold L
Nature (2022) 609 pp. 1048-1055 [ DOI: doi:10.1038/s41586-022-05236-5 Pubmed: 36104563 ]
- Dna (539-mer) (161 kDa, DNA from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Dna (539-mer) (171 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2b type 1-k (11 kDa, Protein from Homo sapiens)
- Telomeric mononucleosome (Complex from Homo sapiens)
Telomeric trinucleosome in open state
Resolution: 11.0 Å
EM Method: Single-particle
Fitted PDBs: 7v9s
Q-score: 0.093
Soman A, Wong SY, Korolev N, Surya W, Lattmann S, Vogirala VK, Chen Q, Berezhnoy NV, van Noort J, Rhodes D, Nordenskiold L
Nature (2022) 609 pp. 1048-1055 [ DOI: doi:10.1038/s41586-022-05236-5 Pubmed: 36104563 ]
- Dna (408-mer) (129 kDa, DNA from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2b type 1-k (11 kDa, Protein from Homo sapiens)
- Telomeric mononucleosome (Complex from Homo sapiens)
- Dna (408-mer) (122 kDa, DNA from Homo sapiens)
Structure of the human CCANdeltaT CENP-A alpha-satellite complex
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 7yyh
Q-score: 0.075
Yatskevich S, Muir KW, Bellini D, Zhang Z, Yang J, Tischer T, Predin M, Dendooven T, McLaughlin SH, Barford D
Science (2022) 376 pp. 844-852 [ Pubmed: 35420891 DOI: doi:10.1126/science.abn3810 ]
- Centromere protein l (39 kDa, Protein from Homo sapiens)
- Centromere protein n (39 kDa, Protein from Homo sapiens)
- Centromere protein p (33 kDa, Protein from Homo sapiens)
- Centromere protein r (20 kDa, Protein from Homo sapiens)
- Centromere protein c (61 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Centromere protein i (86 kDa, Protein from Homo sapiens)
- Dna (171-mer) (52 kDa, DNA from Homo sapiens)
- Dna (171-mer) (52 kDa, DNA from Homo sapiens)
- Centromere protein h (28 kDa, Protein from Homo sapiens)
- Histone h2a type 1-c (14 kDa, Protein from Homo sapiens)
- Centromere protein q (30 kDa, Protein from Homo sapiens)
- Centromere protein k (31 kDa, Protein from Homo sapiens)
- Centromere protein u (47 kDa, Protein from Homo sapiens)
- Centromere protein m (19 kDa, Protein from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Ccan-cenp-a inner centromere complex (Complex)
- Centromere protein o (33 kDa, Protein from Homo sapiens)
- Histone h3-like centromeric protein a (16 kDa, Protein from Homo sapiens)
CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and 601 DNA sequence
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 7u4d
Q-score: 0.114
Zhou K, Gebala M, Woods D, Sundararajan K, Edwards G, Krzizike D, Wereszczynski J, Straight AF, Luger K
Nat Struct Mol Biol (2022) 29 pp. 403-413 [ DOI: doi:10.1038/s41594-022-00758-y Pubmed: 35422519 ]
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Centromere protein n (34 kDa, Protein from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Human kinetochore protein cenp-n with the centromeric nucleosome containing cenp-a (601 sequence dna) (Complex from Homo sapiens)
- Histone h3-like centromeric protein a (16 kDa, Protein from Homo sapiens)