Structure of Bre1-nucleosome complex - state3
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8t3t
Q-score: 0.535
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ DOI: doi:10.1038/s41594-023-01137-x Pubmed: 37872231 ]
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)
Structure of Bre1-nucleosome complex - state2
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8t3w
Q-score: 0.52
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ DOI: doi:10.1038/s41594-023-01137-x Pubmed: 37872231 ]
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)
Structure of apo telomeric nucleosome
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8ox0
Q-score: 0.607
Hu H, van Roon AM, Ghanim GE, Ahsan B, Oluwole AO, Peak-Chew SY, Robinson CV, Nguyen THD
Sci Adv (2023) 9 pp. eadi4148-eadi4148 [ DOI: doi:10.1126/sciadv.adi4148 Pubmed: 37624885 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Human telomeric nucleosome (Complex from Homo sapiens)
- Telomeric dna g strand (46 kDa, DNA from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (14 kDa, Protein from Homo sapiens)
- Trf1core in complex with telomeric nucleosome (Complex)
- Telomeric dna c strand (43 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1-c (14 kDa, Protein from Homo sapiens)
Structure of TRF1core in complex with telomeric nucleosome
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ox1
Q-score: 0.579
Hu H, van Roon AM, Ghanim GE, Ahsan B, Oluwole AO, Peak-Chew SY, Robinson CV, Nguyen THD
Sci Adv (2023) 9 pp. eadi4148-eadi4148 [ DOI: doi:10.1126/sciadv.adi4148 Pubmed: 37624885 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Human telomeric nucleosome (Complex from Homo sapiens)
- Telomeric dna g strand (46 kDa, DNA from Homo sapiens)
- Telomeric repeat-binding factor 1 (50 kDa, Protein from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (14 kDa, Protein from Homo sapiens)
- Trf1core in complex with telomeric nucleosome (Complex)
- Telomeric dna c strand (43 kDa, DNA from Homo sapiens)
- Telomeric repeat-binding factor 1 (50 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Human trf1core complex (Complex from Homo sapiens)
- Histone h2a type 1-c (14 kDa, Protein from Homo sapiens)