Resolution: 7.64 Å
EM Method: Single-particle
Fitted PDBs: 8ihl
Q-score: 0.109
Nishimura M, Fujii T, Tanaka H, Maehara K, Morishima K, Shimizu M, Kobayashi Y, Nozawa K, Takizawa Y, Sugiyama M, Ohkawa Y, Kurumizaka H
Commun Biol (2024) 7 pp. 61-61 [ DOI: doi:10.1038/s42003-023-05694-1 Pubmed: 38191828 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (353-mer) (108 kDa, DNA from synthetic construct)
- Overlapping tri-nucleosome (511 kDa, Complex from Homo sapiens)
- Dna (353-mer) (109 kDa, DNA from synthetic construct)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human nucleosome with scFv
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8jl9
Q-score: 0.569
Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Ehara H, Sekine SI, Hayashi G, Takizawa Y, Kurumizaka H
Nucleic Acids Res (2023) 51 pp. 10364-10374 [ DOI: doi:10.1093/nar/gkad754 Pubmed: 37718728 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
- The 193 bp human nucleosome with scfv (Complex from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8jla
Q-score: 0.453
Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Ehara H, Sekine SI, Hayashi G, Takizawa Y, Kurumizaka H
Nucleic Acids Res (2023) 51 pp. 10364-10374 [ DOI: doi:10.1093/nar/gkad754 Pubmed: 37718728 ]
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
- Histone h4 (10 kDa, Protein from Homo sapiens)
- Histone h3.1 (12 kDa, Protein from Homo sapiens)
- The human nucleosome lacking n-terminal region of h2a, h2b, h3, and h4 with scfv (Complex from Homo sapiens)
- Histone h2b type 1-j (11 kDa, Protein from Homo sapiens)
Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8jlb
Q-score: 0.602
Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Ehara H, Sekine SI, Hayashi G, Takizawa Y, Kurumizaka H
Nucleic Acids Res (2023) 51 pp. 10364-10374 [ DOI: doi:10.1093/nar/gkad754 Pubmed: 37718728 ]
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
- The 145 bp human nucleosome containing h3.2 c110a mutant with scfv (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
Resolution: 2.48 Å
EM Method: Single-particle
Fitted PDBs: 8jld
Q-score: 0.579
Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Ehara H, Sekine SI, Hayashi G, Takizawa Y, Kurumizaka H
Nucleic Acids Res (2023) 51 pp. 10364-10374 [ DOI: doi:10.1093/nar/gkad754 Pubmed: 37718728 ]
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- The 145 bp human nucleosome containing acetylated h3 tail with scfv (Complex from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)