Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8hai
Q-score: 0.212
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]
- Histone acetyltransferase p300 (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- The p300 catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 8haj
Q-score: 0.2
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]
- Histone acetyltransferase p300 (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- The p300 catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8hak
Q-score: 0.214
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]
- Histone acetyltransferase p300 (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- The p300 catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8hal
Q-score: 0.195
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]
- Creb-binding protein (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- The cbp catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 2
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8ham
Q-score: 0.242
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]
- Creb-binding protein (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- The cbp catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 3
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8han
Q-score: 0.209
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]
- Creb-binding protein (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- The cbp catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the 1:1 Orc1 BAH domain in complex with nucleosome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7e9c
Q-score: 0.311
Jiang H, Yu C, Liu CP, Han X, Yu Z, Xu RM
To Be Published
- Origin recognition complex subunit 1 (Complex)
- Yeast orc1 bah domain in complex with 147-bp nucleosome (Complex from Saccharomyces cerevisiae)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b.2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (Complex from Escherichia coli)
- Histone h2a.2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone (Complex from Saccharomyces cerevisiae)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Origin recognition complex subunit 1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7e9f
Q-score: 0.319
Jiang H, Yu C, Liu CP, Han X, Yu Z, Xu RM
To Be Published
- Dna (Complex from Saccharomyces cerevisiae S288C)
- Origin recognition complex subunit 1 (Complex)
- Histone (Complex from Escherichia coli)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b.2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Origin recognition complex subunit 1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a.2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast orc1 bah domain in complex with 147-bp nucleosome (Complex from Saccharomyces cerevisiae S288C)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Structure of the 1:1 cGAS-nucleosome complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7ccq
Q-score: 0.371
Cao D, Han X, Fan X, Xu RM, Zhang X
Cell Res (2020) 30 pp. 1088-1097 [ Pubmed: 33051594 DOI: doi:10.1038/s41422-020-00422-4 ]
- The cgas-nucleosome complex in 1:1 molar ratio (Complex from Homo sapiens)
- Histone h4 (9 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Cyclic gmp-amp synthase (42 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (10 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (11 kDa, Protein from Homo sapiens)
Structure of the 2:2 cGAS-nucleosome complex
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7ccr
Q-score: 0.152
Cao D, Han X, Fan X, Xu RM, Zhang X
Cell Res (2020) 30 pp. 1088-1097 [ Pubmed: 33051594 DOI: doi:10.1038/s41422-020-00422-4 ]
- Histone h4 (9 kDa, Protein from Homo sapiens)
- The cgas-nucleosome complex in 2:2 molar ratio (Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Cyclic gmp-amp synthase (42 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (10 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (11 kDa, Protein from Homo sapiens)