structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 8cbn
Q-score: 0.392
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ Pubmed: 37615563 DOI: doi:10.1093/nar/gkad674 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (Complex from Homo sapiens)
- Ledgf/p75 pwwp domain protein (Complex)
- Histone (Complex from synthetic construct)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- H3k36me3 dinucleosome-ledgf/p75 pwwp domain complex (Complex from Xenopus laevis)
- Widom 601 dna (50 kDa, DNA from synthetic construct)
- Widom 601 dna (51 kDa, DNA from synthetic construct)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8cbq
Q-score: 0.304
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ DOI: doi:10.1093/nar/gkad674 Pubmed: 37615563 ]
- Dna (Complex from Homo sapiens)
- Ledgf/p75 pwwp domain complex (Complex)
- H3k36me3 dinucleosome-ledgf/p75 pwwp domain complex (Complex from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- Histone (Complex from synthetic construct)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Widom 601 dna (51 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Widom 601 dna (50 kDa, DNA from synthetic construct)
H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8pc5
Q-score: 0.521
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ DOI: doi:10.1093/nar/gkad674 Pubmed: 37615563 ]
- Dna (Complex from synthetic construct)
- Histones (Complex from Xenopus laevis)
- H3k36me3 nucleosome-ledgf/p75 pwwp domain complex (Complex)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex - pose 2
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8pc6
Q-score: 0.484
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ DOI: doi:10.1093/nar/gkad674 Pubmed: 37615563 ]
- Dna (Complex from synthetic construct)
- Histones (Complex from Xenopus laevis)
- H3k36me3 nucleosome-ledgf/p75 pwwp domain complex - pose 2 (Complex)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8peo
Q-score: 0.548
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ DOI: doi:10.1093/nar/gkad674 Pubmed: 37615563 ]
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- H3k36me2 nucleosome-ledgf/p75 pwwp domain complex (Complex from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex - pose 2
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8pep
Q-score: 0.399
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ DOI: doi:10.1093/nar/gkad674 Pubmed: 37615563 ]
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- H3k36me2 nucleosome-ledgf/p75 pwwp domain complex - pose 2 (Complex from Xenopus laevis)