Structure of SWI/SNF chromatin remodeler RSC bound to a nucleosome
Resolution: 15.0 Å
EM Method: Single-particle
Fitted PDBs: 6tda
Q-score: 0.081
Wagner FR, Dienemann C, Wang H, Stutzer A, Tegunov D, Urlaub H, Cramer P
Nature (2020) 579 pp. 448-451 [ DOI: doi:10.1038/s41586-020-2088-0 Pubmed: 32188943 ]
- Dna-i (72 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Actin-related protein 7 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc7 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Regulator of ty1 transposition protein 102 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Chromatin remodelling complex rsc ('remodels the structure of chromatin') bound to a nucleosome (Complex)
- Chromatin structure-remodeling complex subunit rsc4 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nuclear protein sth1/nps1 (156 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- High temperature lethal protein 1 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atpase domain of sth1 bound to the nucleosome (Complex from Xenopus laevis)
- Rsc core (Complex from Saccharomyces cerevisiae S288C)
- Chromatin structure-remodeling complex protein rsc58 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit sfh1 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (32 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chromatin structure-remodeling complex protein rsc8 (126 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex protein rsc6 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Dna-j (73 kDa, DNA from synthetic construct)
- Dna (Complex from synthetic construct)
SAGA DUB module bound to a ubiqitinated nucleosome
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6t9l
Q-score: 0.394
Wang H, Dienemann C, Stutzer A, Urlaub H, Cheung ACM, Cramer P
Nature (2020) 577 pp. 717-720 [ DOI: doi:10.1038/s41586-020-1933-5 Pubmed: 31969703 ]
- Ubiquitin carboxyl-terminal hydrolase 8 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin (Complex from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Saga-associated factor 11 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Saga dub-ubiqitinated nucleosome complex (250 kDa, Complex)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Polyubiquitin-c (8 kDa, Protein from Homo sapiens)
- Ubiquitin carboxyl-terminal hydrolase 8 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Widom601 dna (145-mer) (44 kDa, DNA from synthetic construct)
- Saga-associated factor 73 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription and mrna export factor sus1 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleosome (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Widom601 dna (145-mer) (44 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Saga dub module (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Dna (Complex from synthetic construct)