Structure of nucleosome-AAG complex (T-50I, post-catalytic state)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xfj
Q-score: 0.466
Cell Discov (2023) 9 pp. 62-62 [ Pubmed: 37339965 DOI: doi:10.1038/s41421-023-00560-0 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Nucleosome (Complex from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (Complex from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Complex (Complex)
Structure of nucleosome-AAG complex (A-55I, post-catalytic state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xnp
Q-score: 0.563
Cell Discov (2023) 9 pp. 62-62 [ Pubmed: 37339965 DOI: doi:10.1038/s41421-023-00560-0 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
Structure of nucleosome-DI complex (-30I, Apo state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfc
Q-score: 0.569
Cell Discov (2023) 9 pp. 62-62 [ Pubmed: 37339965 DOI: doi:10.1038/s41421-023-00560-0 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
Structure of nucleosome-AAG complex (A-30I, post-catalytic state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfh
Q-score: 0.515
Cell Discov (2023) 9 pp. 62-62 [ Pubmed: 37339965 DOI: doi:10.1038/s41421-023-00560-0 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Nucleosome (Complex from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (Complex from Homo sapiens)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Complex (Complex)
Structure of nucleosome-DI complex (-50I, Apo state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfi
Q-score: 0.525
Cell Discov (2023) 9 pp. 62-62 [ Pubmed: 37339965 DOI: doi:10.1038/s41421-023-00560-0 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
Structure of nucleosome-AAG complex (A-53I, free state)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7xfl
Q-score: 0.55
Cell Discov (2023) 9 pp. 62-62 [ Pubmed: 37339965 DOI: doi:10.1038/s41421-023-00560-0 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
Structure of nucleosome-AAG complex (A-53I, post-catalytic state)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xfm
Q-score: 0.466
Cell Discov (2023) 9 pp. 62-62 [ Pubmed: 37339965 DOI: doi:10.1038/s41421-023-00560-0 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Dna-3-methyladenine glycosylase (Complex)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Nucleosome (Complex)
Structure of nucleosome-DI complex (-55I, Apo state)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7xfn
Q-score: 0.55
Cell Discov (2023) 9 pp. 62-62 [ Pubmed: 37339965 DOI: doi:10.1038/s41421-023-00560-0 ]
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6jyl
Q-score: 0.452
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Iswi (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleosome (Complex from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Dna (Complex from Escherichia coli K-12)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Iswi-nucleosome-crosslinked (300 kDa, Complex)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, Protein from Escherichia coli K-12)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
The complex of ISWI-nucleosome in the ADP.BeF-bound state
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 6k1p
Q-score: 0.42
Yan L, Wu H, Li X, Gao N, Chen Z
Nat Struct Mol Biol (2019) 26 pp. 258-266 [ DOI: doi:10.1038/s41594-019-0199-9 Pubmed: 30872815 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Nuleosome (Complex from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Dna (Complex from Escherichia coli K-12)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from Escherichia coli K-12)
- Isw1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- The complex of iswi-nucleosome in the adp-bef-bound state (300 kDa, Complex)
- Iswi chromatin-remodeling complex atpase isw1 (123 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))