Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8smw
Q-score: 0.526
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8smx
Q-score: 0.549
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8smy
Q-score: 0.544
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8smz
Q-score: 0.535
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8sn0
Q-score: 0.547
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8sn1
Q-score: 0.526
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8sn2
Q-score: 0.452
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Human nucleosome core particle in complex with rnf168-ubch5c (256 kDa, Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8sn3
Q-score: 0.429
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn4
Q-score: 0.439
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8sn5
Q-score: 0.41
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ DOI: doi:10.1016/j.molcel.2023.12.036 Pubmed: 38242129 ]
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)