Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8sn3
Q-score: 0.429
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn4
Q-score: 0.439
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8sn5
Q-score: 0.41
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn6
Q-score: 0.434
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn7
Q-score: 0.445
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn8
Q-score: 0.443
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (256 kDa, Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8sn9
Q-score: 0.424
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (with backside ub) (256 kDa, Complex from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8sna
Q-score: 0.405
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Human nucleosome core particle in complex with rnf168 and ubch5c~ub (with backside ub) (256 kDa, Complex from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 d3 (17 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (13 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8txv
Q-score: 0.432
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-c/e/f/g/i (14 kDa, Protein from Homo sapiens)
- Human nucleosome core particle ubiquitylated at histone h2a k15 in complex with rnf168 (class 1) (280 kDa, Complex from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (66 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (12 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8txw
Q-score: 0.455
Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G
Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]
- Histone h2b type 1-c/e/f/g/i (14 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rnf168 (66 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2a type 1-b/e (12 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Human nucleosome core particle ubiquitylated at histone h2a k15 in complex with rnf168 (class 2) (280 kDa, Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Polyubiquitin-b (9 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)