APE1 bound to a nucleosome core particle with AP-site at SHL-6
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7u50
Q-score: 0.415
Weaver TM, Hoitsma NM, Spencer JJ, Gakhar L, Schnicker NJ, Freudenthal BD
Nat Commun (2022) 13 pp. 5390-5390 [ DOI: doi:10.1038/s41467-022-33057-7 Pubmed: 36104361 ]
- Dna (145-mer) (45 kDa, DNA from synthetic construct)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
- Ape1 bound to a nucleosome core particle with ap-site at shl-6 (Complex from Homo sapiens)
- Dna (144-mer) (45 kDa, DNA from synthetic construct)
- Dna-(apurinic or apyrimidinic site) endonuclease (35 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)
Nucleosome core particle with AP-site at SHL-6
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7u51
Q-score: 0.537
Weaver TM, Hoitsma NM, Spencer JJ, Gakhar L, Schnicker NJ, Freudenthal BD
Nat Commun (2022) 13 pp. 5390-5390 [ DOI: doi:10.1038/s41467-022-33057-7 Pubmed: 36104361 ]
- Dna (145-mer) (45 kDa, DNA from synthetic construct)
- Nucleosome core particle with ap-site at shl-6 (Complex from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
- Dna (145-mer) (45 kDa, DNA from synthetic construct)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)
nucleosome core particle with AP-site at SHL-6.5
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7u52
Q-score: 0.454
Weaver TM, Hoitsma NM, Spencer JJ, Gakhar L, Schnicker NJ, Freudenthal BD
Nat Commun (2022) 13 pp. 5390-5390 [ DOI: doi:10.1038/s41467-022-33057-7 Pubmed: 36104361 ]
- Dna (145-mer) (45 kDa, DNA from synthetic construct)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
- Nucleosome core particle with ap-site at shl-6.5 (Complex from Homo sapiens)
- Dna (145-mer) (45 kDa, DNA from synthetic construct)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)
Nucleosome core particle with AP-site at SHL0
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7u53
Q-score: 0.385
Weaver TM, Hoitsma NM, Spencer JJ, Gakhar L, Schnicker NJ, Freudenthal BD
Nat Commun (2022) 13 pp. 5390-5390 [ DOI: doi:10.1038/s41467-022-33057-7 Pubmed: 36104361 ]
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
- Dna (144-mer) (45 kDa, DNA from synthetic construct)
- Nucleosome core particle with ap-site at shl0 (200 kDa, Complex)
- Dna (144-mer) (44 kDa, DNA from synthetic construct)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)