Medusavirus Nucleosome Core Particle
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ua7
Q-score: 0.438
Toner CM, Hoitsma NM, Weerawarana S, Luger K
Nat Commun (2024) 15 pp. 9138-9138 [ DOI: doi:10.1038/s41467-024-53364-5 Pubmed: 39443461 ]
- Histone h3 (21 kDa, Protein from Medusavirus)
- Widom 601 dna (Complex from synthetic construct)
- Medusavirus nucleosome core particle (Complex)
- Widom 601 dna strand 1 (63 kDa, DNA from synthetic construct)
- Widom 601 dna strand 2 (63 kDa, DNA from synthetic construct)
- Histone h2b (24 kDa, Protein from Medusavirus)
- Histone h2a (28 kDa, Protein from Medusavirus)
- Histone h4 (14 kDa, Protein from Medusavirus)
- Histone complex (Complex from Medusavirus)
Medusavirus Nucleosome Core Particle Native
Toner CM, Hoitsma NM, Weerawarana S, Luger K
Nat Commun (2024) 15 pp. 9138-9138 [ DOI: doi:10.1038/s41467-024-53364-5 Pubmed: 39443461 ]
- Widom 601 dna (Complex from synthetic construct)
- Medusavirus nucleosome core particle (Complex)
- Histone h2a (Protein from Medusavirus medusae)
- Widom 601 dna (207 mer) strand 1 (DNA from synthetic construct)
- Widom 601 dna (207 mer) strand 2 (DNA from synthetic construct)
- Histone h3 (Protein from Medusavirus medusae)
- Histone h4 (Protein from Medusavirus medusae)
- Histone h2b (Protein from Medusavirus medusae)
- Histone complex (Complex from Medusavirus)
CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and 601 DNA sequence
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 7u4d
Q-score: 0.114
Zhou K, Gebala M, Woods D, Sundararajan K, Edwards G, Krzizike D, Wereszczynski J, Straight AF, Luger K
Nat Struct Mol Biol (2022) 29 pp. 403-413 [ DOI: doi:10.1038/s41594-022-00758-y Pubmed: 35422519 ]
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Centromere protein n (34 kDa, Protein from Homo sapiens)
- Histone h3-like centromeric protein a (16 kDa, Protein from Homo sapiens)
- Human kinetochore protein cenp-n with the centromeric nucleosome containing cenp-a (601 sequence dna) (Complex from Homo sapiens)
Cryo-EM structure of CENP-A nucleosome (palindromic alpha satellite DNA) in complex with CENP-N
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7u46
Q-score: 0.559
Zhou K, Gebala M, Woods D, Sundararajan K, Edwards G, Krzizike D, Wereszczynski J, Straight AF, Luger K
Nat Struct Mol Biol (2022) 29 pp. 403-413 [ DOI: doi:10.1038/s41594-022-00758-y Pubmed: 35422519 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Centromere protein n (34 kDa, Protein from Homo sapiens)
- Cenp-a nucleosome with kinetochore protein cenp-n (Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Histone h3-like centromeric protein a (16 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 7u47
Q-score: 0.179
Zhou K, Gebala M, Woods D, Sundararajan K, Edwards G, Krzizike D, Wereszczynski J, Straight AF, Luger K
Nat Struct Mol Biol (2022) 29 pp. 403-413 [ DOI: doi:10.1038/s41594-022-00758-y Pubmed: 35422519 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Centromere protein n (34 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Cryoem structure of centromeric nucleosome in complex with kinetochore protein cenp-n (Complex from Homo sapiens)
- Histone h3-like centromeric protein a (16 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
Structure of two nucleosomes bridged by human PARP2
Resolution: 10.5 Å
EM Method: Single-particle
Fitted PDBs: 6usj
Q-score: 0.092
Gaullier G, Roberts G, Muthurajan UM, Bowerman S, Rudolph J, Mahadevan J, Jha A, Rae PS, Luger K
PLoS One (2020) 15 pp. e0240932-e0240932 [ DOI: doi:10.1371/journal.pone.0240932 Pubmed: 33141820 ]
- Parp2 (Complex from Homo sapiens)
- Dna (Complex from synthetic construct)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Poly [adp-ribose] polymerase 2 (67 kDa, Protein from Homo sapiens)
- Widom 601 dna (160-mer) (51 kDa, DNA from synthetic construct)
- Two nucleosomes bridged by parp2 (554 kDa, Complex)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Widom 601 dna (160-mer) (50 kDa, DNA from synthetic construct)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone (Complex from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6c0w
Q-score: 0.39
Pentakota S, Zhou K, Smith C, Maffini S, Petrovic A, Morgan GP, Weir JR, Vetter IR, Musacchio A, Luger K
eLife (2017) 6 [ Pubmed: 29280735 DOI: doi:10.7554/eLife.33442 ]
- 147 mer dna (45 kDa, DNA from Escherichia coli)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Centromere protein n (34 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b (13 kDa, Protein from Homo sapiens)
- 147 mer dna (45 kDa, DNA from Escherichia coli)
- Histone h3-like centromeric protein a (16 kDa, Protein from Homo sapiens)
- Complex of cenp-a nucleosome with cenp-n (230 kDa, Complex from Homo sapiens)