Structure of yeast replisome associated with FACT and histone hexamer, Composite map
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8xgc
Q-score: 0.407
Li N, Gao Y, Zhang Y, Yu D, Lin J, Feng J, Li J, Xu Z, Zhang Y, Dang S, Zhou K, Liu Y, Li XD, Tye BK, Li Q, Gao N, Zhai Y
Nature (2024) 627 pp. 890-897 [ Pubmed: 38448592 DOI: doi:10.1038/s41586-024-07152-2 ]
- Endogenous replisomes (Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2a.1 (14 kDa, Protein from Saccharomyces cerevisiae)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae)
- Dna (51-mer) (15 kDa, DNA from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Dna (39-mer) (11 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of replication checkpoint protein 1 (124 kDa, Protein from Saccharomyces cerevisiae)
- Chromosome segregation in meiosis protein 3 (36 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2b.2 (14 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae)
- Fact complex subunit spt16 (118 kDa, Protein from Saccharomyces cerevisiae)
- Fact complex subunit pob3 (63 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae)
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae)
- Topoisomerase 1-associated factor 1 (141 kDa, Protein from Saccharomyces cerevisiae)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf2 (29 kDa, Protein from Saccharomyces cerevisiae)
Structure of nucleosome-AAG complex (T-50I, post-catalytic state)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xfj
Q-score: 0.466
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Complex (Complex)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Dna-3-methyladenine glycosylase (Complex from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Nucleosome (Complex from Xenopus laevis)
Structure of nucleosome-AAG complex (A-55I, post-catalytic state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xnp
Q-score: 0.563
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
Structure of nucleosome-DI complex (-30I, Apo state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfc
Q-score: 0.569
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
Structure of nucleosome-AAG complex (A-30I, post-catalytic state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfh
Q-score: 0.515
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Complex (Complex)
- Dna-3-methyladenine glycosylase (Complex from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Nucleosome (Complex from Xenopus laevis)
Structure of nucleosome-DI complex (-50I, Apo state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfi
Q-score: 0.525
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
Structure of nucleosome-AAG complex (A-53I, free state)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7xfl
Q-score: 0.55
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
Structure of nucleosome-AAG complex (A-53I, post-catalytic state)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xfm
Q-score: 0.466
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (Complex)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Nucleosome (Complex)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
Structure of nucleosome-DI complex (-55I, Apo state)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7xfn
Q-score: 0.55
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
The ClassA RSC-Nucleosome Complex
Resolution: 7.13 Å
EM Method: Single-particle
Fitted PDBs: 6kw3
Q-score: 0.086
Ye Y, Wu H, Chen K, Clapier CR, Verma N, Zhang W, Deng H, Cairns BR, Gao N, Chen Z
Science (2019) 366 pp. 838-843 [ DOI: doi:10.1126/science.aay0033 Pubmed: 31672915 ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Actin-related protein 7 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc7 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Chromatin structure-remodeling complex protein rsc6 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nuclear protein sth1/nps1 (156 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc3 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna 167 (51 kDa, DNA from Homo sapiens)
- Regulator of ty1 transposition protein 102 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc2 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex protein rsc30 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna 167 (51 kDa, DNA from Homo sapiens)
- Chromatin structure-remodeling complex subunit rsc9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc58 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (13 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex protein rsc8 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit sfh1 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- High temperature lethal protein 1 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rsc (Complex from Saccharomyces cerevisiae S288c)
- Chromatin structure-remodeling complex subunit rsc4 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))