The motor-nucleosome module of human chromatin remodeling PBAF-nucleosome complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7vdt
Q-score: 0.549
Yuan JJ, Chen KJ, Zhang WB, Chen ZC
Nature (2022) 605 pp. 166-171 [ DOI: doi:10.1038/s41586-022-04658-5 Pubmed: 35477757 ]
- Isoform 2 of transcription activator brg1 (169 kDa, Protein from Homo sapiens)
- Beryllium trifluoride ion (66 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- The motor-nucleosome module of human chromatin remodeling pbaf-nucleosome complex (Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (207-mer) (63 kDa, DNA from synthetic construct)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Dna (207-mer) (64 kDa, DNA from synthetic construct)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
The overall structure of human chromatin remodeling PBAF-nucleosome complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7vdv
Q-score: 0.315
Yuan JJ, Chen KJ, Zhang WB, Chen ZC
Nature (2022) 605 pp. 166-171 [ DOI: doi:10.1038/s41586-022-04658-5 Pubmed: 35477757 ]
- Beryllium trifluoride ion (66 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Unknown (613 Da, Protein from unidentified)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily b member 1 (44 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Actin-like protein 6a (47 kDa, Protein from Homo sapiens)
- At-rich interactive domain-containing protein 2,at-rich interactive domain-containing protein 2 (97 kDa, Protein from Homo sapiens)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily e member 1 (46 kDa, Protein from Homo sapiens)
- Isoform 2 of bromodomain-containing protein 7 (74 kDa, Protein from Homo sapiens)
- Actin, cytoplasmic 1 (41 kDa, Protein from Homo sapiens)
- The motor-nucleosome module of human chromatin remodeling pbaf-nucleosome complex (Complex from Homo sapiens)
- Phd finger protein 10 (58 kDa, Protein from Homo sapiens)
- Protein polybromo-1 (116 kDa, Protein from Homo sapiens)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Unknown (1 kDa, Protein from unidentified)
- Isoform 2 of transcription activator brg1 (169 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily d member 1 (60 kDa, Protein from Homo sapiens)
- Dna (207-mer) (63 kDa, DNA from synthetic construct)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Swi/snf complex subunit smarcc2 (133 kDa, Protein from Homo sapiens)
- Dna (207-mer) (64 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
The structure of SWI/SNF-nucleosome complex
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 7egp
Q-score: 0.105
He ZY, Chen KJ, Ye YP, Chen ZC
Cell Discov (2021) 7 pp. 28-28 [ DOI: doi:10.1038/s41421-021-00262-5 Pubmed: 33907182 ]
- Beryllium trifluoride ion (66 Da, Ligand)
- Actin-related protein 7 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone (Complex from Xenopus laevis)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Swi/snf global transcription activator complex subunit swp82 (71 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (Complex)
- Swi/snf complex subunit swi3 (94 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription regulatory protein snf2 (114 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription regulatory protein snf12 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- The structure of swi/snf chromatin remodeler complex (Complex)
- Regulator of ty1 transposition protein 102 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf chromatin-remodeling complex subunit snf5 (103 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (239-mer) (72 kDa, DNA from synthetic construct)
- Swi/snf chromatin-remodeling complex subunit swi1 (124 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription regulatory protein snf6 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (239-mer) (72 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Magnesium ion (24 Da, Ligand)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
The structure of ALC1 bound to the nucleosome
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7enn
Q-score: 0.567
Nat Commun (2021) 12 pp. 4057-4057 [ DOI: doi:10.1038/s41467-021-24320-4 Pubmed: 34210977 ]
- Beryllium trifluoride ion (66 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (Complex)
- Histone (Complex from Xenopus laevis)
- Chromodomain-helicase-dna-binding protein 1-like (101 kDa, Protein from Homo sapiens)
- Alc1 (Complex from Homo sapiens)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- The structure of alc1 bound to the nucleosome (Complex)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
The ClassC RSC-Nucleosome Complex
Resolution: 10.13 Å
EM Method: Single-particle
Fitted PDBs: 6kw5
Q-score: 0.062
Ye YP, Wu H, Chen KJ, Verma N, Cairns B, Gao N, Chen ZC
To Be Published
- Chromatin structure-remodeling complex protein rsc30 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Actin-related protein 7 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (13 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex subunit rsc7 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- High temperature lethal protein 1 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex protein rsc6 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc2 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit rsc9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nuclear protein sth1/nps1 (156 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Regulator of ty1 transposition protein 102 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna 167 (51 kDa, DNA from Homo sapiens)
- Dna 167 (51 kDa, DNA from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex subunit rsc4 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex protein rsc3 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Chromatin structure-remodeling complex protein rsc8 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rsc (Complex from Saccharomyces cerevisiae S288c)
- Chromatin structure-remodeling complex protein rsc58 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin structure-remodeling complex subunit sfh1 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))