Baseplate structure of Escherichia phage Mu
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9ki1
Q-score: 0.517
To Be Published
- Probable tape measure protein (73 kDa, Protein from Escherichia phage Mu)
- Fe (iii) ion (55 Da, Ligand)
- Tail sheath protein (53 kDa, Protein from Escherichia phage Mu)
- Baseplate puncturing device gp45 (21 kDa, Protein from Escherichia phage Mu)
- Baseplate hub protein gp44 (41 kDa, Protein from Escherichia phage Mu)
- Baseplate protein gp47 (38 kDa, Protein from Escherichia phage Mu)
- Calcium ion (40 Da, Ligand)
- Escherichia phage mu (Virus from Escherichia phage Mu)
- Baseplate protein gp46 (16 kDa, Protein from Escherichia phage Mu)
- Tail fiber protein s (55 kDa, Protein from Escherichia phage Mu)
- Dna circularization protein n (52 kDa, Protein from Escherichia phage Mu)
- Baseplate protein gp48 (20 kDa, Protein from Escherichia phage Mu)
- Tail tube protein (12 kDa, Protein from Escherichia phage Mu)
Structure of the bacteriophage T5 tail tip complex
Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H
Int J Mol Sci (2024) 25 [ Pubmed: 39126049 DOI: doi:10.3390/ijms25158479 ]
- Baseplate hub protein pb3 (107 kDa, Protein from Escherichia phage T5)
- Distal tail protein pb9 (22 kDa, Protein from Escherichia phage T5)
- Escherichia phage t5 (Virus from Escherichia phage T5)
- Baseplate tube protein p140 (34 kDa, Protein from Escherichia phage T5)
Structure of baseplate with receptor binding complex of Agrobacterium phage Milano
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8fqc
Q-score: 0.498
Sonani RR, Palmer LK, Esteves NC, Horton AA, Sebastian AL, Kelly RJ, Wang F, Kreutzberger MAB, Russell WK, Leiman PG, Scharf BE, Egelman EH
Nat Commun (2024) 15 pp. 756-756 [ DOI: doi:10.1038/s41467-024-44959-z Pubmed: 38272938 ]
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Baseplate hub protein, gp26 (49 kDa, Protein from Agrobacterium phage Milano)
- Tail-tube, gp21 (14 kDa, Protein from Agrobacterium phage Milano)
- Tail sheath protein, gp20 (53 kDa, Protein from Agrobacterium phage Milano)
- Tail spike protein, gp124 (61 kDa, Protein from Agrobacterium phage Milano)
- Fe (iii) ion (55 Da, Ligand)
- Baseplate central spike, gp27 (20 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 1, gp28 (19 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 2 protein, gp29 (43 kDa, Protein from Agrobacterium phage Milano)
- Short tail fibers, gp31 (31 kDa, Protein from Agrobacterium phage Milano)
- Baseplate centerpiece, gp25 (43 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 3 protein, gp30 (31 kDa, Protein from Agrobacterium phage Milano)
Baseplate of DT57C bacteriophage in the full state
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8hqz
Q-score: 0.446
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]
- Minor tail protein (34 kDa, Protein from Escherichia phage DT57C)
- Distal tail protein (22 kDa, Protein from Escherichia phage DT57C)
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- L-shaped tail fiber assembly (15 kDa, Protein from Escherichia phage DT57C)
- Tape measure protein (132 kDa, Protein from Escherichia phage DT57C)
- Tail tube protein (50 kDa, Protein from Escherichia phage DT57C)
- Baseplate hub protein (107 kDa, Protein from Escherichia phage DT57C)
- L-shaped tail fiber assembly (113 kDa, Protein from Escherichia phage DT57C)
Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8gtc
Q-score: 0.275
Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N
Nat Commun (2023) 14 pp. 3609-3609 [ DOI: doi:10.1038/s41467-023-39220-y Pubmed: 37330604 ]
- Distal tail protein (23 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Hub protein (31 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Major tail protein (13 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Dinoroseobacter phage vb_dshs-r4c (Virus from Dinoroseobacter phage vB DshS-R4C)
- Ribonuclease iii (22 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Megatron protein (154 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
Tail barrel assembly of the phicrAss001 virion with C12 symmetry imposed
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7qoj
Q-score: 0.562
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
Nature (2023) 617 pp. 409-416 [ DOI: doi:10.1038/s41586-023-06019-2 Pubmed: 37138077 ]
- Ring protein 4/5 gp34 (26 kDa, Protein from Bacteroides phage crAss001)
- Tail fiber protein gp22 (92 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 2 gp40 (26 kDa, Protein from Bacteroides phage crAss001)
- Tail hub protein a gp38 (24 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 1 gp43 (27 kDa, Protein from Bacteroides phage crAss001)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Portal protein gp20 (93 kDa, Protein from Bacteroides phage crAss001)
- Tail hub protein b gp39 (13 kDa, Protein from Bacteroides phage crAss001)
- Cargo protein 1 gp45 (90 kDa, Protein from Bacteroides phage crAss001)
- Bacteroides phage crass001 (Virus from Bacteroides phage crAss001)
- Ring protein 3 gp35 (26 kDa, Protein from Bacteroides phage crAss001)
Tail assembly of the phicrAss001 virion with C6 symmetry imposed
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7qol
Q-score: 0.525
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
Nature (2023) 617 pp. 409-416 [ DOI: doi:10.1038/s41586-023-06019-2 Pubmed: 37138077 ]
- Ring protein 4/5 gp34 (26 kDa, Protein from Bacteroides phage crAss001)
- Tail fiber protein gp22 (92 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 2 gp40 (26 kDa, Protein from Bacteroides phage crAss001)
- Tail hub protein a gp38 (24 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 1 gp43 (27 kDa, Protein from Bacteroides phage crAss001)
- Muzzle protein gp44 (156 kDa, Protein from Bacteroides phage crAss001)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Portal protein gp20 (93 kDa, Protein from Bacteroides phage crAss001)
- Tail hub protein b gp39 (13 kDa, Protein from Bacteroides phage crAss001)
- Muzzle bound helix (1 kDa, Protein from Bacteroides phage crAss001)
- Cargo protein 1 gp45 (90 kDa, Protein from Bacteroides phage crAss001)
- Bacteroides phage crass001 (Virus from Bacteroides phage crAss001)
- Ring protein 3 gp35 (26 kDa, Protein from Bacteroides phage crAss001)
Tail tip of siphophage T5 : tip proteins
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7zhj
Q-score: 0.438
Linares R, Arnaud CA, Effantin G, Darnault C, Epalle NH, Boeri Erba E, Schoehn G, Breyton C
Sci Adv (2023) 9 pp. eade9674-eade9674 [ Pubmed: 36961893 DOI: doi:10.1126/sciadv.ade9674 ]
- L-shaped tail fiber protein p132 (15 kDa, Protein from Escherichia phage T5)
- Tail tube protein (50 kDa, Protein from Escherichia phage T5)
- Escherichia virus t5 (1 MDa, Virus from Escherichia virus T5)
- Minor tail protein (34 kDa, Protein from Escherichia phage T5)
- Distal tail protein (22 kDa, Protein from Escherichia phage T5)
- Pore-forming tail tip protein pb2 (131 kDa, Protein from Escherichia phage T5)
- Probable baseplate hub protein (107 kDa, Protein from Escherichia phage T5)
Tail tip of siphophage T5 : full complex after interaction with its bacterial receptor FhuA
Resolution: 4.29 Å
EM Method: Single-particle
Fitted PDBs: 7zn2
Q-score: 0.32
Linares R, Arnaud CA, Effantin G, Darnault C, Epalle NH, Boeri Erba E, Schoehn G, Breyton C
Sci Adv (2023) 9 pp. eade9674-eade9674 [ DOI: doi:10.1126/sciadv.ade9674 Pubmed: 36961893 ]
- Tail tube protein (50 kDa, Protein from Escherichia phage T5)
- Probable baseplate hub protein (107 kDa, Protein from Escherichia phage T5)
- Straight fiber protein pb4 (74 kDa, Protein from Escherichia phage T5)
- L-shaped tail fiber protein p132 (15 kDa, Protein from Escherichia phage T5)
- Distal tail protein (22 kDa, Protein from Escherichia phage T5)
- Minor tail protein (34 kDa, Protein from Escherichia phage T5)
- Pore-forming tail tip protein pb2 (131 kDa, Protein from Escherichia phage T5)
- Escherichia virus t5 (Virus from Escherichia virus T5)
Tail tip of siphophage T5 : bent fibre after interaction with its bacterial receptor FhuA
Resolution: 4.32 Å
EM Method: Single-particle
Fitted PDBs: 7zn4
Q-score: 0.372
Linares R, Arnaud CA, Effantin G, Darnault C, Epalle NH, Boeri Erba E, Schoehn G, Breyton C
Sci Adv (2023) 9 pp. eade9674-eade9674 [ DOI: doi:10.1126/sciadv.ade9674 Pubmed: 36961893 ]
- Probable central straight fiber (74 kDa, Protein from Escherichia phage T5)
- Probable baseplate hub protein (107 kDa, Protein from Escherichia phage T5)
- Escherichia virus t5 (Virus from Escherichia virus T5)