Cryo-EM structure of Human Fibroblast Activation Protein alpha dimer with one SUMO-I3 VHHs bound
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9dvq
Q-score: 0.618
Xu Z, Sinha A, Pandya DN, Schnicker NJ, Wadas TJ
Rsc Chem Biol (2025) [ DOI: doi:10.1039/D4CB00267A ]
- Sumo-i3 (Complex from Lama glama)
- Complex of human fibroblast activation protein alpha with sumo-i3 (230 kDa, Complex)
- Antiplasmin-cleaving enzyme fap, soluble form (86 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human fibroblast activation protein alpha (Complex from Homo sapiens)
- Sumo-i3 (26 kDa, Protein from Lama glama)
Cryo-EM structure of Human Fibroblast Activation Protein alpha dimer with two SUMO-I3 VHHs bound
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9dvr
Q-score: 0.527
Xu Z, Sinha A, Pandya DN, Schnicker NJ, Wadas TJ
Rsc Chem Biol (2025) [ DOI: doi:10.1039/D4CB00267A ]
- Sumo-i3 (Complex from Lama glama)
- Antiplasmin-cleaving enzyme fap, soluble form (86 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human fibroblast activation protein alpha (Complex from Homo sapiens)
- Sumo-i3 (26 kDa, Protein from Lama glama)
- Complex of human fibroblast activation protein alpha with sumo-i3 (250 kDa, Complex)
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8eay
Q-score: 0.403
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ DOI: doi:10.1016/j.chom.2023.07.002 Pubmed: 37516111 ]
- 4i3 heavy chain protein (13 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (45 kDa, Protein from Human metapneumovirus A)
- 4i3 light chain protein (11 kDa, Protein from Homo sapiens)
- Mpv fusion protein complex with 4i3 fab (Complex from Human metapneumovirus)
Human nuclear pre-60S ribosomal subunit (State I3) - Overall map
Science (2023) 381 pp. eadh3892-eadh3892 [ Pubmed: 37410842 DOI: doi:10.1126/science.adh3892 ]
Human nuclear pre-60S ribosomal subunit (State I3) - Composite map
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8fl4
Q-score: 0.494
Science (2023) 381 pp. eadh3892-eadh3892 [ Pubmed: 37410842 DOI: doi:10.1126/science.adh3892 ]
- 60s ribosomal protein l27 (15 kDa, Protein from human)
- 60s ribosomal protein l12 (17 kDa, Protein from human)
- 5.8s rrna (50 kDa, RNA from human)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s rrna (1 MDa, RNA from human)
- 60s ribosomal protein l11 (20 kDa, Protein from human)
- 60s ribosomal protein l37 (11 kDa, Protein from human)
- 60s ribosomal protein l36 (12 kDa, Protein from human)
- 60s ribosomal protein l8 (28 kDa, Protein from human)
- 60s ribosomal protein l3 (46 kDa, Protein from human)
- Pescadillo homolog (68 kDa, Protein from human)
- Proline-, glutamic acid- and leucine-rich protein 1 (119 kDa, Protein from human)
- Human nuclear pre-60s ribosomal subunit (state i3) (Complex from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from human)
- Testis-expressed protein 10 (105 kDa, Protein from human)
- Potassium ion (39 Da, Ligand)
- Coiled-coil domain-containing protein 86 (40 kDa, Protein from human)
- Ribosomal biogenesis protein las1l (83 kDa, Protein from human)
- 60s ribosomal protein l31 (14 kDa, Protein from human)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosome biogenesis protein nop53 (54 kDa, Protein from human)
- 60s ribosomal protein l7a (30 kDa, Protein from human)
- 60s ribosomal protein l14 (23 kDa, Protein from human)
- 60s ribosomal protein l34 (13 kDa, Protein from human)
- 60s ribosomal protein l9 (21 kDa, Protein from human)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from human)
- Zinc finger protein 593 (15 kDa, Protein from human)
- Gtp-binding protein 4 (74 kDa, Protein from human)
- 60s ribosomal protein l39 (6 kDa, Protein from human)
- 60s ribosomal protein l22 (14 kDa, Protein from human)
- Ribosome biogenesis protein nsa2 homolog (30 kDa, Protein from human)
- Notchless protein homolog 1 (53 kDa, Protein from human)
- Probable ribosome biogenesis protein rlp24 (19 kDa, Protein from human)
- 60s ribosomal protein l13 (24 kDa, Protein from human)
- Mrna turnover protein 4 homolog (27 kDa, Protein from human)
- Guanine nucleotide-binding protein-like 3 (62 kDa, Protein from human)
- Protein llp homolog (15 kDa, Protein from human)
- 60s ribosomal protein l27a (16 kDa, Protein from human)
- 60s ribosomal protein l18 (21 kDa, Protein from human)
- 60s ribosomal protein l5 (34 kDa, Protein from human)
- 60s ribosomal protein l6 (32 kDa, Protein from human)
- 60s ribosomal protein l18a (20 kDa, Protein from human)
- Protein sda1 homolog (80 kDa, Protein from human)
- 60s ribosomal protein l17 (21 kDa, Protein from human)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l19 (23 kDa, Protein from human)
- 60s ribosomal protein l23 (14 kDa, Protein from human)
- 60s ribosomal protein l10a (24 kDa, Protein from human)
- 60s ribosomal protein l13a (23 kDa, Protein from human)
- 60s ribosomal protein l7 (29 kDa, Protein from human)
- 60s ribosomal protein l4 (47 kDa, Protein from human)
- Nucleolar gtp-binding protein 2 (83 kDa, Protein from human)
- Wd repeat-containing protein 18 (47 kDa, Protein from human)
- 60s ribosomal protein l26 (17 kDa, Protein from human)
- 60s ribosomal protein l35 (14 kDa, Protein from human)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l30 (12 kDa, Protein from human)
- 60s ribosomal protein l38 (8 kDa, Protein from human)
- 60s ribosomal protein l15 (24 kDa, Protein from human)
- 60s ribosomal protein l37a (10 kDa, Protein from human)
- 60s ribosomal protein l7-like 1 (29 kDa, Protein from human)
- 60s ribosomal protein l23a (17 kDa, Protein from human)
- 5s rrna (38 kDa, RNA from human)
- 60s ribosomal protein l28 (15 kDa, Protein from human)
- 60s ribosomal protein l32 (15 kDa, Protein from human)
- 60s ribosomal protein l21 (18 kDa, Protein from human)
CryoEM structure of DH270.I3-CH848.10.17
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8sb1
Q-score: 0.404
Henderson R, Zhou Y, Stalls V, Wiehe K, Saunders KO, Wagh K, Anasti K, Barr M, Parks R, Alam SM, Korber B, Haynes BF, Bartesaghi A, Acharya P
Nat Commun (2023) 14 pp. 2782-2782 [ Pubmed: 37188681 DOI: doi:10.1038/s41467-023-38108-1 ]
- Ch848.10.17 gp120 (52 kDa, Protein from HIV-1 06TG.HT008)
- Dh270.i3 variable light chain (11 kDa, Protein from Homo sapiens)
- Dh270.i3 variable heavy chain (14 kDa, Protein from Homo sapiens)
- Dh270.i3-ch848.10.17 (Complex from Homo sapiens)
- Ch848.10.17.sosip gp41 (14 kDa, Protein from HIV-1 06TG.HT008)
Cryo electron microscopy of actively translating human polysomes (POST-i3 state).
Behrmann E, Loerke J, Budkevich TV, Yamamoto K, Schmidt A, Penczek PA, Vos MR, Burger J, Mielke T, Scheerer P, Spahn CMT
Cell (2015) 161 pp. 845-857 [ Pubmed: 25957688 DOI: doi:10.1016/j.cell.2015.03.052 ]
- Native ribosomal complex from polysomes - post-i3 state (4 MDa, Sample)
- 80s ribosomal complex (4 MDa, Complex from Homo sapiens)