Human nuclear pre-60S ribosomal subunit (State I3) - Composite map
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8fl4
Q-score: 0.494
Science (2023) 381 pp. eadh3892-eadh3892 [ Pubmed: 37410842 DOI: doi:10.1126/science.adh3892 ]
- 60s ribosomal protein l27 (15 kDa, Protein from human)
- 60s ribosomal protein l12 (17 kDa, Protein from human)
- 5.8s rrna (50 kDa, RNA from human)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s rrna (1 MDa, RNA from human)
- 60s ribosomal protein l11 (20 kDa, Protein from human)
- 60s ribosomal protein l37 (11 kDa, Protein from human)
- 60s ribosomal protein l36 (12 kDa, Protein from human)
- 60s ribosomal protein l8 (28 kDa, Protein from human)
- 60s ribosomal protein l3 (46 kDa, Protein from human)
- Pescadillo homolog (68 kDa, Protein from human)
- Proline-, glutamic acid- and leucine-rich protein 1 (119 kDa, Protein from human)
- Human nuclear pre-60s ribosomal subunit (state i3) (Complex from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from human)
- Testis-expressed protein 10 (105 kDa, Protein from human)
- Potassium ion (39 Da, Ligand)
- Coiled-coil domain-containing protein 86 (40 kDa, Protein from human)
- Ribosomal biogenesis protein las1l (83 kDa, Protein from human)
- 60s ribosomal protein l31 (14 kDa, Protein from human)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosome biogenesis protein nop53 (54 kDa, Protein from human)
- 60s ribosomal protein l7a (30 kDa, Protein from human)
- 60s ribosomal protein l14 (23 kDa, Protein from human)
- 60s ribosomal protein l34 (13 kDa, Protein from human)
- 60s ribosomal protein l9 (21 kDa, Protein from human)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from human)
- Zinc finger protein 593 (15 kDa, Protein from human)
- Gtp-binding protein 4 (74 kDa, Protein from human)
- 60s ribosomal protein l39 (6 kDa, Protein from human)
- 60s ribosomal protein l22 (14 kDa, Protein from human)
- Ribosome biogenesis protein nsa2 homolog (30 kDa, Protein from human)
- Notchless protein homolog 1 (53 kDa, Protein from human)
- Probable ribosome biogenesis protein rlp24 (19 kDa, Protein from human)
- 60s ribosomal protein l13 (24 kDa, Protein from human)
- Mrna turnover protein 4 homolog (27 kDa, Protein from human)
- Guanine nucleotide-binding protein-like 3 (62 kDa, Protein from human)
- Protein llp homolog (15 kDa, Protein from human)
- 60s ribosomal protein l27a (16 kDa, Protein from human)
- 60s ribosomal protein l18 (21 kDa, Protein from human)
- 60s ribosomal protein l5 (34 kDa, Protein from human)
- 60s ribosomal protein l6 (32 kDa, Protein from human)
- 60s ribosomal protein l18a (20 kDa, Protein from human)
- Protein sda1 homolog (80 kDa, Protein from human)
- 60s ribosomal protein l17 (21 kDa, Protein from human)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l19 (23 kDa, Protein from human)
- 60s ribosomal protein l23 (14 kDa, Protein from human)
- 60s ribosomal protein l10a (24 kDa, Protein from human)
- 60s ribosomal protein l13a (23 kDa, Protein from human)
- 60s ribosomal protein l7 (29 kDa, Protein from human)
- 60s ribosomal protein l4 (47 kDa, Protein from human)
- Nucleolar gtp-binding protein 2 (83 kDa, Protein from human)
- Wd repeat-containing protein 18 (47 kDa, Protein from human)
- 60s ribosomal protein l26 (17 kDa, Protein from human)
- 60s ribosomal protein l35 (14 kDa, Protein from human)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l30 (12 kDa, Protein from human)
- 60s ribosomal protein l38 (8 kDa, Protein from human)
- 60s ribosomal protein l15 (24 kDa, Protein from human)
- 60s ribosomal protein l37a (10 kDa, Protein from human)
- 60s ribosomal protein l7-like 1 (29 kDa, Protein from human)
- 60s ribosomal protein l23a (17 kDa, Protein from human)
- 5s rrna (38 kDa, RNA from human)
- 60s ribosomal protein l28 (15 kDa, Protein from human)
- 60s ribosomal protein l32 (15 kDa, Protein from human)
- 60s ribosomal protein l21 (18 kDa, Protein from human)
Transient state structure of CRISPR-Cpf1 (Cas12a) I3 conformation
Resolution: 4.07 Å
EM Method: Single-particle
Fitted PDBs: 6gte
Q-score: 0.374
Stella S, Mesa P, Thomsen J, Paul B, Alcon P, Jensen SB, Saligram B, Moses ME, Hatzakis NS, Montoya G
Cell (2018) 175 pp. 1856-1871.e21 [ DOI: doi:10.1016/j.cell.2018.10.045 Pubmed: 30503205 ]
- Rna (29-mer) (13 kDa, RNA from Francisella tularensis subsp. novicida U112)
- Crispr-associated endonuclease cas12a (155 kDa, Protein from Francisella tularensis subsp. novicida (strain U112))
- Dna (5'-d(p*cp*gp*ap*gp*cp*tp*cp*gp*tp*tp*ap*gp*ap*gp*ap*ap*g)-3') (16 kDa, DNA from Francisella tularensis subsp. novicida U112)
- Crispr-associated endonuclease cas12a (Complex from Francisella tularensis subsp. novicida U112)
- Dna (5'-d(p*ap*tp*gp*ap*cp*tp*tp*cp*tp*cp*tp*ap*ap*cp*ap*ap*gp*cp*tp*cp*g)-3') (16 kDa, DNA from Francisella tularensis subsp. novicida U112)
- Transition state complex i3 conformation (180 kDa, Complex)
- Nucleic acids (Complex from Francisella tularensis subsp. novicida U112)