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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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EMD-12906

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Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Release date: Nov. 10, 2021
Resolution: 4.72 Å
EM Method: Single-particle
Fitted PDBs: 7ohr
Q-score: 0.317

Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P

PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]

Sample:

Atp-dependent rna helicase has1 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nuclear gtp-binding protein nug1 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
Ribosome biogenesis protein ytm1 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome assembly factor mrt4 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Pescadillo homolog (69 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp7 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rrna-processing protein ebp2 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (cytosine(2870)-c(5))-methyltransferase (69 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar complex-associated protein 3 (75 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nog1-tap associated immature ribosomal particles. (Complex from Saccharomyces cerevisiae S288C)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
27s pre-rrna (guanosine(2922)-2'-o)-methyltransferase (96 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein nsa2 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein erb1 (91 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein brx1 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar protein 16 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

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EMD-12907

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Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Release date: Nov. 3, 2021
Resolution: 4.38 Å
EM Method: Single-particle
Fitted PDBs: 7ohs
Q-score: 0.28

Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P

PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]

Sample:

Atp-dependent rna helicase has1 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
Ribosome assembly factor mrt4 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Protein mak16 (35 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Pescadillo homolog (69 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp7 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome production factor 1 (35 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein nsa1 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nog1-tap associated immature ribosomal particles. (Complex from Saccharomyces cerevisiae S288C)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein nsa2 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein erb1 (91 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein brx1 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleolar protein 16 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosomal rna-processing protein 1 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

EMD-7445

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Yeast nucleolar pre-60S ribosomal subunit (state 3)

Release date: March 14, 2018
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6cb1
Q-score: 0.131

Sanghai ZA, Miller L, Molloy KR, Barandun J, Hunziker M, Chaker-Margot M, Wang J, Chait BT, Klinge S

Nature (2018) 556 pp. 126-129 [ DOI: doi:10.1038/nature26156 Pubmed: 29512650 ]

Sample:

Ribosome biogenesis protein ytm1 (39 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae BY4741)
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae BY4741)
Atp-dependent rna helicase has1 (56 kDa, Protein from Saccharomyces cerevisiae BY4741)
Ribosome biogenesis protein brx1 (33 kDa, Protein from Saccharomyces cerevisiae BY4741)
Ribosome production factor 1 (35 kDa, Protein from Saccharomyces cerevisiae BY4741)
Ribosome biogenesis protein nsa1 (51 kDa, Protein from Saccharomyces cerevisiae BY4741)
Nucleolar protein 16 (26 kDa, Protein from Saccharomyces cerevisiae BY4741)
Ribosome biogenesis protein erb1 (62 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae BY4741)
Ribosomal rna-processing protein 1 (33 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae BY4741)
Rrna-processing protein ebp2 (8 kDa, Protein from Saccharomyces cerevisiae BY4741)
Yeast nucleolar pre-60s ribosomal subunit (Complex from Saccharomyces cerevisiae BY4741)
Pescadillo homolog (69 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae BY4741)
Its2 (74 kDa, RNA from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae BY4741)
Brx1 associated peptide (2 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae BY4741)
Protein mak16 (35 kDa, Protein from Saccharomyces cerevisiae BY4741)
Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae BY4741)
35s pre-ribosomal rna miscrna (1 MDa, RNA from Saccharomyces cerevisiae BY4741)
Ribosome biogenesis protein rlp7 (35 kDa, Protein from Saccharomyces cerevisiae BY4741)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae BY4741)
Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae BY4741)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae BY4741)

[Show more]

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EMDB [3]

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