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sample_name:"KLLA0D08305p" AND citation_journal_name:"ELIFE" AND natural_source_ncbi_code:"559292"
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (Map C1)
Release date: Dec. 5, 2018
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6fyx
Q-score: 0.314
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6fyx
Q-score: 0.314
Llacer JL, Hussain T, Saini AK, Nanda JD, Kaur S, Gordiyenko Y, Kumar R, Hinnebusch AG, Lorsch JR, Ramakrishnan V
eLife (2018) 7 [ DOI: doi:10.7554/eLife.39273 Pubmed: 30475211 ]
Sample:
- 40s ribosomal protein s22 (14 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0d08305p (26 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s14 (14 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (Complex from Saccharomyces cerevisiae)
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s29 (6 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s1 (29 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0b06182p (12 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0f09812p (27 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s6 (26 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Structure of a partial yeast 48s preinitiation complex with eif5 n-terminal domain (model c1) (1 MDa, Complex)
- Eukaryotic translation initiation factor 5 (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 3 subunit g (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Initialtion factors (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s16 (15 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Methionine (149 Da, Ligand)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Eukaryotic translation initiation factor 3 subunit a (110 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 3 subunit i (38 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (31-mer) (15 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Initiation factors (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Eif3c,eif3c (86 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s28 (7 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s0 (28 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Eukaryotic translation initiation factor 3 subunit b (88 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Klla0f25542p (13 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Trna (Complex from Saccharomyces cerevisiae)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Trnai (24 kDa, RNA from Saccharomyces cerevisiae)
Release date: May 18, 2016
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5it7
Q-score: 0.358
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5it7
Q-score: 0.358
Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS
eLife (2016) 5 [ DOI: doi:10.7554/eLife.13567 Pubmed: 27159451 ]
Sample:
- 40s ribosomal protein s14 (13 kDa, Protein from Yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Yeast)
- 40s ribosomal protein s0 (22 kDa, Protein from Yeast)
- 40s ribosomal protein s6 (25 kDa, Protein from Yeast)
- 18s ribosomal rna (579 kDa, RNA from Yeast)
- Klla0b06182p (7 kDa, Protein from Yeast)
- Klla0b01474p (14 kDa, Protein from Yeast)
- Klla0c08371p (13 kDa, Protein from Yeast)
- Klla0f18040p (16 kDa, Protein from Yeast)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Klla0b01562p (16 kDa, Protein from Yeast)
- Klla0e23651p (17 kDa, Protein from Yeast)
- Ubiquitin fusion protein (5 kDa, Protein from Yeast)
- Klla0a07227p (20 kDa, Protein from Yeast)
- Rpl28 (16 kDa, Protein from Yeast)
- 5s ribosomal rna (38 kDa, RNA from Yeast)
- Klla0e23673p (20 kDa, Protein from Yeast)
- Zinc ion (65 Da, Ligand)
- Cricket paralysis virus ires (Complex from Cricket paralysis virus)
- Klla0b07139p (38 kDa, Protein from Yeast)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Yeast)
- 60s ribosomal protein l36 (10 kDa, Protein from Yeast)
- Klla0d10659p (22 kDa, Protein from Yeast)
- Klla0f09812p (23 kDa, Protein from Yeast)
- Klla0f04675p (22 kDa, Protein from Yeast)
- Ul11 (12 kDa, Protein from Yeast)
- Klla0e12453p (21 kDa, Protein from Yeast)
- Klla0d05181p (11 kDa, Protein from Yeast)
- Klla0e05941p (9 kDa, Protein from Yeast)
- 40s ribosomal protein s24 (15 kDa, Protein from Yeast)
- Klla0f04499p (21 kDa, Protein from Yeast)
- Klla0b05742p (14 kDa, Protein from Yeast)
- 40s ribosomal protein s29 (6 kDa, Protein from Yeast)
- 60s ribosomal protein l44 (11 kDa, Protein from Yeast)
- Klla0f05247p (13 kDa, Protein from Yeast)
- 60s ribosomal protein l24 (7 kDa, Protein from Yeast)
- 40s ribosomal protein s8 (22 kDa, Protein from Yeast)
- Klla0a07194p (15 kDa, Protein from Yeast)
- Cricket paralysis virus ires (60 kDa, Macromolecule from Cricket paralysis virus)
- Klla0c13519p (21 kDa, Protein from Yeast)
- Ribosomal protein (24 kDa, Protein from Yeast)
- Klla0d16071p (6 kDa, Protein from Yeast)
- 60s ribosomal protein l13 (22 kDa, Protein from Yeast)
- Klla0f07843p (13 kDa, Protein from Yeast)
- Klla0d07405p (11 kDa, Protein from Yeast)
- Rps23 (16 kDa, Protein from Yeast)
- Ubiquitin-40s ribosomal protein s27a (7 kDa, Protein from Yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from Yeast)
- Klla0c18216p (8 kDa, Protein from Yeast)
- Klla0e06997p (13 kDa, Protein from Yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from Yeast)
- 40s ribosomal protein s22 (14 kDa, Protein from Yeast)
- 40s ribosomal protein s21 (9 kDa, Protein from Yeast)
- Klla0e03455p (15 kDa, Protein from Yeast)
- Kluyveromyces lactis 80s ribosome in complex with the cricket paralysis virus ires and eef2 (4 MDa, Complex)
- Klla0b13409p (14 kDa, Protein from Yeast)
- Kluyveromyces lactis 80s ribosome (Complex from Kluyveromyces lactis)
- Klla0b04686p (19 kDa, Protein from Yeast)
- Klla0d05643p (24 kDa, Protein from Yeast)
- 40s ribosomal protein s4 (29 kDa, Protein from Yeast)
- Klla0a10483p (17 kDa, Protein from Yeast)
- Klla0f08261p (19 kDa, Protein from Yeast)
- Klla0d06941p (33 kDa, Protein from Yeast)
- Klla0b08173p (11 kDa, Protein from Yeast)
- 25s ribosomal rna (1 MDa, Macromolecule from Yeast)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l20 (20 kDa, Protein from Yeast)
- 60s ribosomal protein l41-a (3 kDa, Protein from Baker's yeast)
- (2s)-1-amino-n,n,n-trimethyl-1-oxobutan-2-aminium (145 Da, Ligand)
- Klla0d05115p (11 kDa, Protein from Yeast)
- Eef2 (Complex from Saccharomyces cerevisiae P283)
- Klla0d08305p (24 kDa, Protein from Yeast)
- 5.8s ribosomal rna (50 kDa, RNA from Yeast)
- 40s ribosomal protein s27 (8 kDa, Protein from Yeast)
- Klla0d03410p (25 kDa, Protein from Yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- Klla0a06336p (20 kDa, Protein from Yeast)
- Klla0e12277p (35 kDa, Protein from Yeast)
- Klla0d16027p (26 kDa, Protein from Yeast)
- Klla0e00573p (25 kDa, Protein from Yeast)
- 40s ribosomal protein s12 (13 kDa, Protein from Yeast)
- Ribosomal protein l15 (24 kDa, Protein from Yeast)
- 40s ribosomal protein s16 (15 kDa, Protein from Yeast)
- 40s ribosomal protein s28 (7 kDa, Protein from Yeast)
- Klla0e06843p (13 kDa, Protein from Yeast)
- Eft2p (91 kDa, Protein from Saccharomyces cerevisiae P283)
- Ribosomal protein l37 (9 kDa, Protein from Yeast)
- Klla0c04809p (6 kDa, Protein from Yeast)
- Klla0b02937p (12 kDa, Protein from Yeast)
- 40s ribosomal protein s1 (24 kDa, Protein from Yeast)
- Klla0f25542p (12 kDa, Protein from Yeast)