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sample_name:"KLLA0D08305p" AND xref_links:"chebi" AND author_name:"Llacer" AND xref_links:"cpx"
Cryo-EM structure of a partial yeast 48S preinitiation complex in its open conformation.
Release date: July 31, 2019
Resolution: 5.15 Å
EM Method: Single-particle
Fitted PDBs: 6gsm
Q-score: 0.197
Resolution: 5.15 Å
EM Method: Single-particle
Fitted PDBs: 6gsm
Q-score: 0.197
Llacer JL, Hussain T, Dong J, Villamayor L, Gordiyenko Y, Hinnebusch AG
Nucleic Acids Res (2021) [ Pubmed: 34648019 DOI: doi:10.1093/nar/gkab908 ]
Sample:
- Eukaryotic translation initiation factor 2 subunit beta (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (11 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factors eif1 and eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0b01562p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit gamma (47 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s14 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b06182p (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ubiquitin-40s ribosomal protein s27a (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s1 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f09812p (23 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 3 subunit g (5 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Klla0e23673p (20 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s0 (23 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- [(2~{r},3~{s},4~{r},5~{r})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2~{s})-2-azanyl-4-methylsulfanyl-butanoate (478 Da, Ligand)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (5'-r(p*ap*ap*u)-3') (919 Da, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s12 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 1a (10 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s28 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 3 subunit i (38 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 3 subunit c (76 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s6 (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- Zinc ion (65 Da, Ligand)
- Klla0d08305p (24 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f25542p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b11231p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 40s ribosomal protein s30 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s29 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s16 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factors eif2 and eif3 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f07843p (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b08173p (11 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit alpha (30 kDa, Protein from Saccharomyces cerevisiae S288C)
- Structure of a partial yeast 48s preinitiation complex in open conformation (1 MDa, Complex)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor eif-1 (10 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s22 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 3 subunit a,eukaryotic translation initiation factor 3 subunit a,eif3a (62 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 3 subunit b (75 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))