Cryo-EM structure of Ku 70/80 bound to inositol hexakisphosphate
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7zt6
Q-score: 0.387
Kefala Stavridi A, Gontier A, Morin V, Frit P, Ropars V, Barboule N, Racca C, Jonchhe S, Morten MJ, Andreani J, Rak A, Legrand P, Bourand-Plantefol A, Hardwick SW, Chirgadze DY, Davey P, De Oliveira TM, Rothenberg E, Britton S, Calsou P, Blundell TL, Varela PF, Chaplin AK, Charbonnier JB
Nucleic Acids Res (2023) 51 pp. 11732-11747 [ Pubmed: 37870477 DOI: doi:10.1093/nar/gkad863 ]
- Cryo-em structure of ku 70/80 bound to inositol hexakisphosphate (Complex from Homo sapiens)
- X-ray repair cross-complementing protein 6 (73 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
Vaccinia C16 N-terminal domains
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8ag3
Q-score: 0.464
Rivera-Calzada A, Arribas-Bosacoma R, Ruiz-Ramos A, Escudero-Bravo P, Boskovic J, Fernandez-Leiro R, Oliver AW, Pearl LH, Llorca O
Nat Commun (2022) 13 pp. 7062-7062 [ Pubmed: 36400800 DOI: doi:10.1038/s41467-022-34843-z ]
- Protein c10 (42 kDa, Protein from Vaccinia virus Western Reserve)
- C16 n-terminal domains in the c16-ku70/ku80 complex (230 kDa, Complex from Vaccinia virus)
Vaccinia C16 protein bound to Ku70/Ku80
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8ag4
Q-score: 0.551
Rivera-Calzada A, Arribas-Bosacoma R, Ruiz-Ramos A, Escudero-Bravo P, Boskovic J, Fernandez-Leiro R, Oliver AW, Pearl LH, Llorca O
Nat Commun (2022) 13 pp. 7062-7062 [ Pubmed: 36400800 DOI: doi:10.1038/s41467-022-34843-z ]
- X-ray repair cross-complementing protein 5 (85 kDa, Protein from Homo sapiens)
- Vaccinia c16 protein bound to ku70/ku80 (230 kDa, Complex from Homo sapiens)
- Protein c10 (42 kDa, Protein from Vaccinia virus Western Reserve)
- X-ray repair cross-complementing protein 6 (74 kDa, Protein from Homo sapiens)
Vaccinia C16 protein bound to Ku70/Ku80
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8ag5
Q-score: 0.532
Rivera-Calzada A, Arribas-Bosacoma R, Ruiz-Ramos A, Escudero-Bravo P, Boskovic J, Fernandez-Leiro R, Oliver AW, Pearl LH, Llorca O
Nat Commun (2022) 13 pp. 7062-7062 [ Pubmed: 36400800 DOI: doi:10.1038/s41467-022-34843-z ]
- X-ray repair cross-complementing protein 5 (85 kDa, Protein from Homo sapiens)
- Ku70-xrcc6 (74 kDa, Protein from Homo sapiens)
- Vaccinia c16 protein bound to ku70/ku80 (230 kDa, Complex from Homo sapiens)
- Protein c10 (42 kDa, Protein from Vaccinia virus Western Reserve)
DNA-PK in complex with ATPgammaS
Liang S, Thomas SE, Chaplin AK, Hardwick SW, Chirgadze DY, Blundell TL
Nature (2022) 601 pp. 643-648 [ Pubmed: 34987222 DOI: doi:10.1038/s41586-021-04274-9 ]
DNA-PK complex of DNA end processing
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7sgl
Q-score: 0.445
Liu L, Chen X, Li J, Wang H, Buehl CJ, Goff NJ, Meek K, Yang W, Gellert M
Mol Cell (2022) 82 pp. 177- [ Pubmed: 34936881 DOI: doi:10.1016/j.molcel.2021.11.025 ]
- Dna-dependent protein kinase catalytic subunit (469 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Complex of dna-pkcs, ku70, ku80, artemis and dna (720 kDa, Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Hairpin_1 (16 kDa, DNA from synthetic construct)
- Inositol hexakisphosphate (660 Da, Ligand)
- X-ray repair cross-complementing protein 6 (70 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Protein artemis (79 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
FATKIN domain of the phosphorylated DNA-PKcs
Liu L, Chen X, Li J, Wang H, Buehl CJ, Goff NJ, Meek K, Yang W, Gellert M
Mol Cell (2022) 82 pp. 177-189.e4 [ Pubmed: 34936881 DOI: doi:10.1016/j.molcel.2021.11.025 ]
- Dna-pkcs (Protein from Homo sapiens)
- Ku70 (Protein from Homo sapiens)
- Ku80 (Protein from Homo sapiens)
- Protein artemis (Protein from Homo sapiens)
- Dna-pkcs/ku/artemis/dna complex (720 kDa, Complex)
- Hairpin_1 (DNA from synthetic construct)
KU, Artemis, DNA and DNA-PKcs_Nheat in the NHEJ DNA end processing complex
Liu L, Chen X, Li J, Wang H, Buehl CJ, Goff NJ, Meek K, Yang W, Gellert M
Mol Cell (2022) 82 pp. 177-189.e4 [ Pubmed: 34936881 DOI: doi:10.1016/j.molcel.2021.11.025 ]
- Dna-pkcs (Protein from Homo sapiens)
- Complex of dna-pkcs, ku70, ku80, artemis and dna (720 kDa, Complex)
- Ku70 (Protein from Homo sapiens)
- Ku80 (Protein from Homo sapiens)
- Artemis (Protein from Homo sapiens)
- Hairpin_1 (DNA from synthetic construct)