Cytoplasmic dynein-A heavy chain bound to dynactin-p150glued and IC-LC tower
Resolution: 9.4 Å
EM Method: Single-particle
Fitted PDBs: 8pr0
Q-score: 0.169
Singh K, Lau CK, Manigrasso G, Gama JB, Gassmann R, Carter AP
Science (2024) 383 pp. eadk8544-eadk8544 [ Pubmed: 38547289 DOI: doi:10.1126/science.adk8544 ]
- Dynein light chain 1, cytoplasmic (10 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 intermediate chain 2 (68 kDa, Protein from Homo sapiens)
- Dynein light chain tctex-type 1 (12 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein-a heavy chain bound to dynactin p150 and ic-lc tower (Complex from Homo sapiens)
- Dynactin subunit 1 (142 kDa, Protein from Sus scrofa)
- Cytoplasmic dynein 1 heavy chain 1 (533 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 light intermediate chain 2 (54 kDa, Protein from Homo sapiens)
Cytoplasmic dynein-B heavy chain bound to IC-LC tower
Resolution: 8.2 Å
EM Method: Single-particle
Fitted PDBs: 8pr1
Q-score: 0.193
Singh K, Lau CK, Manigrasso G, Gama JB, Gassmann R, Carter AP
Science (2024) 383 pp. eadk8544-eadk8544 [ Pubmed: 38547289 DOI: doi:10.1126/science.adk8544 ]
- Dynein light chain 1, cytoplasmic (10 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 intermediate chain 2 (68 kDa, Protein from Homo sapiens)
- Dynein light chain tctex-type 1 (12 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein-a heavy chain bound to dynactin p150 and ic-lc tower (Complex from Homo sapiens)
- Cytoplasmic dynein 1 heavy chain 1 (533 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 light intermediate chain 2 (54 kDa, Protein from Homo sapiens)
- Dynein light chain roadblock-type 1 (10 kDa, Protein from Homo sapiens)
Subtomogram average of M66 filaments in Yersinia entomophaga cells
Feldmuller M, Ericson CF, Afanasyev P, Lien YW, Weiss GL, Wollweber F, Schoof M, Hurst M, Pilhofer M
Nat Microbiol (2024) 9 pp. 405-420 [ Pubmed: 38316932 DOI: doi:10.1038/s41564-024-01611-2 ]
Tetanus neurotoxin HC domain in complex with TT104-Fab1
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7oh1
Q-score: 0.039
Pirazzini M, Grinzato A, Corti D, Barbieri S, Leka O, Vallese F, Tonellato M, Silacci-Fregni C, Piccoli L, Kandiah E, Schiavo G, Zanotti G, Lanzavecchia A, Montecucco C
J Clin Inv (2021) 131 [ DOI: doi:10.1172/JCI151676 Pubmed: 34618682 ]
- Tetanus neurotoxin lc-hn domain in complex with tt110-fab1 (Complex)
- Tetanus toxin (99 kDa, Protein from Clostridium tetani)
- Fab tt110 (24 kDa, Protein from Homo sapiens)
- Fab tt110 (Complex from Homo sapiens)
- Fab tt110 (23 kDa, Protein from Homo sapiens)
- Tetanus toxin (Complex from Clostridium tetani)
Structure of the free outer-arm dynein in pre-parallel state
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7kek
Q-score: 0.082
Rao Q, Han L, Wang Y, Chai P, Kuo YW, Yang R, Hu F, Yang Y, Howard J, Zhang K
Nat Struct Mol Biol (2021) 28 pp. 799-810 [ Pubmed: 34556869 DOI: doi:10.1038/s41594-021-00656-9 ]
- Dynein light chain lc8_2b (13 kDa, Protein from Tetrahymena thermophila)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dynein intermediate chain dic2 (77 kDa, Protein from Tetrahymena thermophila)
- Dynein light chain tctex_a (lc2a) (15 kDa, Protein from Tetrahymena thermophila)
- Dynein beta heavy chain (530 kDa, Protein from Tetrahymena thermophila)
- Dynein gamma heavy chain (475 kDa, Protein from Tetrahymena thermophila)
- Dynein light chain 1 (22 kDa, Protein from Tetrahymena thermophila)
- Dynein alpha heavy chain (534 kDa, Protein from Tetrahymena thermophila)
- Dynein light chain lc8_1a (lc10) (12 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Dynein light chain lc8_2a (lc8e) (10 kDa, Protein from Tetrahymena thermophila)
- Dynein light chain lc8_3a (10 kDa, Protein from Tetrahymena thermophila)
- Dynein intermediate chain dic3 (77 kDa, Protein from Tetrahymena thermophila)
- Dynein light chain roadblock lc7b (18 kDa, Protein from Tetrahymena thermophila)
- Free outer-arm dynein (Complex from Tetrahymena thermophila)
- Dynein light chain roadblock lc7a (14 kDa, Protein from Tetrahymena thermophila)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dynein light chain lc8_3b (12 kDa, Protein from Tetrahymena thermophila)
- Dynein light chain lc8_1b (dlc82) (10 kDa, Protein from Tetrahymena thermophila)
- Dynein light chain tctex_b (13 kDa, Protein from Tetrahymena thermophila)
- Thioredoxin lc3bl (14 kDa, Protein from Tetrahymena thermophila)
Resolution: 8.45 Å
EM Method: Single-particle
Fitted PDBs: 7phq
Q-score: 0.111
Bloch JS, Mukherjee S, Kowal J, Filippova EV, Niederer M, Pardon E, Steyaert J, Kossiakoff AA, Locher KP
PNAS (2021) 118 [ Pubmed: 34782475 DOI: doi:10.1073/pnas.2115435118 ]
- Water (18 Da, Ligand)
- Complex of staphylococcus capitis divalent metal ion transporter (dmt), chimeric nanobody dmtnb16_4, nabfab, and anti-fab nanobody (Complex from synthetic construct)
- Dmt-nb16_4 (14 kDa, Protein from synthetic construct)
- Nabfab lc (23 kDa, Protein from synthetic construct)
- Divalent metal cation transporter mnth (47 kDa, Protein from Staphylococcus capitis)
- Anti-fab nanobody (13 kDa, Protein from Lama glama)
- Nabfab hc (25 kDa, Protein from synthetic construct)
Human cytoplasmic dynein-1 tail in the twisted state
Resolution: 8.4 Å
EM Method: Single-particle
Fitted PDBs: 5nvs
Q-score: 0.028
Zhang K, Foster HE, Rondelet A, Lacey SE, Bahi-Buisson N, Bird AW, Carter AP
Cell (2017) 169 pp. 1303-1314.e18 [ Pubmed: 28602352 DOI: doi:10.1016/j.cell.2017.05.025 ]
- Tctex (8 kDa, Protein from Homo sapiens)
- Tctex (8 kDa, Protein from Homo sapiens)
- Intermediate chain (2 kDa, Protein from Homo sapiens)
- Dynein light intermediate chain (25 kDa, Protein from Homo sapiens)
- Dynein heavy chain (76 kDa, Protein from Homo sapiens)
- Dynein heavy chain (79 kDa, Protein from Homo sapiens)
- Dynein intermediate chain (29 kDa, Protein from Homo sapiens)
- N-terminal dimerization domain (10 kDa, Protein from Homo sapiens)
- Lc8 (7 kDa, Protein from Homo sapiens)
- N-terminal dimerization domain (10 kDa, Protein from Homo sapiens)
- Dynein light intermediate chain (25 kDa, Protein from Homo sapiens)
- Robl (10 kDa, Protein from Homo sapiens)
- Human cytoplasmic dynein-1 tail in the twisted n-terminus state (1 MDa, Complex from Homo sapiens)
- Intermediate chain (2 kDa, Protein from Homo sapiens)