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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"LC" AND xref_links:"alphafold" AND citation_journal_name:"NATURE"

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EMD-28199

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Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112

Release date: Feb. 21, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ekd
Q-score: 0.433

Desautels TA, Arrildt KT, Zemla AT, Lau EY, Zhu F, Ricci D, Cronin S, Zost SJ, Binshtein E, Scheaffer SM, Dadonaite B, Petersen BK, Engdahl TB, Chen E, Handal LS, Hall L, Goforth JW, Vashchenko D, Nguyen S, Weilhammer DR, Lo JK, Rubinfeld B, Saada EA, Weisenberger T, Lee TH, Whitener B, Case JB, Ladd A, Silva MS, Haluska RM, Grzesiak EA, Earnhart CG, Hopkins S, Bates TW, Thackray LB, Segelke BW, Lillo AM, Sundaram S, Bloom JD, Diamond MS, Crowe Jr JE, Carnahan RH, Faissol DM

Nature (2024) 629 pp. 878-885 [ DOI: doi:10.1038/s41586-024-07385-1 Pubmed: 38720086 ]

Sample:

Fab llnl-199 hc (14 kDa, Protein from Homo sapiens)
Fab llnl-199 (Complex from Homo sapiens)
Sars cov2 omicron ba.2 rbd complex with fab llnl-199 (Complex)
Sars cov2 omicron ba.2 rbd (Complex from Severe acute respiratory syndrome coronavirus)
Fab llnl-199 lc (12 kDa, Protein from Homo sapiens)
2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Spike protein s2' (20 kDa, Protein from Severe acute respiratory syndrome coronavirus)

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EMD-40220

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96-nm repeat unit of doublet microtubules from Chlamydomonas reinhardtii flagella

Release date: May 31, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8glv

Walton T, Gui M, Velkova S, Fassad MR, Hirst RA, Haarman E, O'Callaghan C, Bottier M, Burgoyne T, Mitchison HM, Brown A

Nature (2023) 618 pp. 625-633 [ Pubmed: 37258679 DOI: doi:10.1038/s41586-023-06140-2 ]

Sample:

Flagellar associated protein (16 kDa, Protein from Chlamydomonas reinhardtii)
Fap44 (222 kDa, Protein from Chlamydomonas reinhardtii)
Fap143 (29 kDa, Protein from Chlamydomonas reinhardtii)
Dynein-1-beta heavy chain, flagellar inner arm i1 complex (511 kDa, Protein from Chlamydomonas reinhardtii)
Fap306 (20 kDa, Protein from Chlamydomonas reinhardtii)
Fap34 (29 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 77 (29 kDa, Protein from Chlamydomonas reinhardtii)
Dynein 14 kda light chain, flagellar outer arm (14 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (177 kDa, Protein from Chlamydomonas reinhardtii)
Radial spike protein 8 (40 kDa, Protein from Chlamydomonas reinhardtii)
Fap21 (49 kDa, Protein from Chlamydomonas reinhardtii)
Coiled-coil protein associated with protofilament ribbons (42 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 45 (59 kDa, Protein from Chlamydomonas reinhardtii)
Dynein light chain roadblock lc7b (11 kDa, Protein from Chlamydomonas reinhardtii)
Outer dynein arm-docking complex protein dc3 (21 kDa, Protein from Chlamydomonas reinhardtii)
Unknown (2 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (25 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 100 (65 kDa, Protein from Chlamydomonas reinhardtii)
Radial spoke protein 16 (39 kDa, Protein from Chlamydomonas reinhardtii)
Nucleoside diphosphate kinase 6 (61 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 299 (27 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar-associated protein 59 (105 kDa, Protein from Chlamydomonas reinhardtii)
Actin (41 kDa, Protein from Chlamydomonas reinhardtii)
Ic97/casc1 n-terminal domain-containing protein (81 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (35 kDa, Protein from Chlamydomonas reinhardtii)
Protein flattop homolog (15 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (15 kDa, Protein from Chlamydomonas reinhardtii)
Dhc_n2 domain-containing protein (465 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (48 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar radial spoke protein 5 (55 kDa, Protein from Chlamydomonas reinhardtii)
Unknown (6 kDa, Protein from Chlamydomonas reinhardtii)
96-nm repeat unit of doublet microtubules from the flagella of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
Flagellar associated protein (267 kDa, Protein from Chlamydomonas reinhardtii)
Guanosine-5'-triphosphate (523 Da, Ligand)
Dynein 18 kda light chain, flagellar outer arm (17 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (27 kDa, Protein from Chlamydomonas reinhardtii)
Tubulin alpha (49 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar-associated protein 172 (101 kDa, Protein from Chlamydomonas reinhardtii)
Wd_repeats_region domain-containing protein (146 kDa, Protein from Chlamydomonas reinhardtii)
Fap43 (199 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (22 kDa, Protein from Chlamydomonas reinhardtii)
Dynein axonemal light chain 1 (22 kDa, Protein from Chlamydomonas reinhardtii)
Pacrg (34 kDa, Protein from Chlamydomonas reinhardtii)
Dynein regulatory complex subunit 6 (28 kDa, Protein from Chlamydomonas reinhardtii)
Radial spoke protein 14 (40 kDa, Protein from Chlamydomonas reinhardtii)
Fap1 (21 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (15 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (32 kDa, Protein from Chlamydomonas reinhardtii)
Outer dynein arm-docking complex subunit 1 (83 kDa, Protein from Chlamydomonas reinhardtii)
Magnesium ion (24 Da, Ligand)
Radial spoke protein 9 (29 kDa, Protein from Chlamydomonas reinhardtii)
Radial spoke protein 4 (49 kDa, Protein from Chlamydomonas reinhardtii)
Aaa+ atpase domain-containing protein (470 kDa, Protein from Chlamydomonas reinhardtii)
Dynein light chain tctex1 (12 kDa, Protein from Chlamydomonas reinhardtii)
Dynein 8 kda light chain, flagellar outer arm (10 kDa, Protein from Chlamydomonas reinhardtii)
Dynein, 78 kda intermediate chain, flagellar outer arm (76 kDa, Protein from Chlamydomonas reinhardtii)
Subunit of axonemal inner dynein (40 kDa, Protein from Chlamydomonas reinhardtii)
Fap210 (53 kDa, Protein from Chlamydomonas reinhardtii)
Radial spoke protein 10 (23 kDa, Protein from Chlamydomonas reinhardtii)
Atpase aaa-type core domain-containing protein (94 kDa, Protein from Chlamydomonas reinhardtii)
Peptidyl-prolyl cis-trans isomerase (19 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar radial spoke protein 1 (87 kDa, Protein from Chlamydomonas reinhardtii)
Radial spoke protein 7 (54 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (27 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (26 kDa, Protein from Chlamydomonas reinhardtii)
Fap166 (23 kDa, Protein from Chlamydomonas reinhardtii)
Dynein 16 kda light chain, flagellar outer arm (17 kDa, Protein from Chlamydomonas reinhardtii)
Drc5 (43 kDa, Protein from Chlamydomonas reinhardtii)
Fap251 (97 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (39 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar outer dynein arm light chain 2 (15 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 73 (35 kDa, Protein from Chlamydomonas reinhardtii)
Fap207 (28 kDa, Protein from Chlamydomonas reinhardtii)
28 kda inner dynein arm light chain, axonemal (28 kDa, Protein from Chlamydomonas reinhardtii)
Dynein 11 kda light chain, flagellar outer arm (13 kDa, Protein from Chlamydomonas reinhardtii)
Inner-arm dynein f/i1 light chain (26 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar radial spoke protein 6 (48 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (43 kDa, Protein from Chlamydomonas reinhardtii)
Fap385 (8 kDa, Protein from Chlamydomonas reinhardtii)
Aaa+ atpase domain-containing protein (523 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (25 kDa, Protein from Chlamydomonas reinhardtii)
Axonemal inner arm i1 intermediate chain dynein ic138 (111 kDa, Protein from Chlamydomonas reinhardtii)
Protofilament ribbon protein of flagellar microtubules (72 kDa, Protein from Chlamydomonas reinhardtii)
Radial spoke protein 11 (21 kDa, Protein from Chlamydomonas reinhardtii)
Dynein light chain 10 (12 kDa, Protein from Chlamydomonas reinhardtii)
Radial spoke protein 3 (56 kDa, Protein from Chlamydomonas reinhardtii)
Dynein light chain roadblock lc7a (11 kDa, Protein from Chlamydomonas reinhardtii)
Inner arm dynein light chain (13 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 20 (22 kDa, Protein from Chlamydomonas reinhardtii)
Tubulin beta (49 kDa, Protein from Chlamydomonas reinhardtii)
Aaa+ atpase domain-containing protein (478 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (42 kDa, Protein from Chlamydomonas reinhardtii)
Ic140 (109 kDa, Protein from Chlamydomonas reinhardtii)
Outer dynein arm protein 1 (62 kDa, Protein from Chlamydomonas reinhardtii)
Dynein regulatory complex subunit 4 (55 kDa, Protein from Chlamydomonas reinhardtii)
Cfap91 domain-containing protein (134 kDa, Protein from Chlamydomonas reinhardtii)
Heavy chain alpha (504 kDa, Protein from Chlamydomonas reinhardtii)
Axonemal inner arm dynein i1/f subunit (31 kDa, Protein from Chlamydomonas reinhardtii)
Radial spoke protein 15 (35 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar radial spoke protein 2 (77 kDa, Protein from Chlamydomonas reinhardtii)
Fap129 (51 kDa, Protein from Chlamydomonas reinhardtii)
Duf4201 domain-containing protein (45 kDa, Protein from Chlamydomonas reinhardtii)
Dynein regulatory complex protein 8 (18 kDa, Protein from Chlamydomonas reinhardtii)
Fap253 (75 kDa, Protein from Chlamydomonas reinhardtii)
Dynein regulatory complex protein 1 (79 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar outer dynein arm heavy chain beta (520 kDa, Protein from Chlamydomonas reinhardtii)
Dynein regulatory complex subunit 2 (64 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (12 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 53 (56 kDa, Protein from Chlamydomonas reinhardtii)
Caltractin (19 kDa, Protein from Chlamydomonas reinhardtii)
Guanosine-5'-diphosphate (443 Da, Ligand)
Dynein regulatory complex subunit 3 (60 kDa, Protein from Chlamydomonas reinhardtii)
Subunit of axonemal inner dynein (46 kDa, Protein from Chlamydomonas reinhardtii)
Cytochrome b5 heme-binding domain-containing protein (26 kDa, Protein from Chlamydomonas reinhardtii)
Flagellar associated protein (53 kDa, Protein from Chlamydomonas reinhardtii)
Nucleoside diphosphate kinase (41 kDa, Protein from Chlamydomonas reinhardtii)
Aaa+ atpase domain-containing protein (468 kDa, Protein from Chlamydomonas reinhardtii)
Fap52 (68 kDa, Protein from Chlamydomonas reinhardtii)
Fap339 (10 kDa, Protein from Chlamydomonas reinhardtii)
Dhc2 (467 kDa, Protein from Chlamydomonas reinhardtii)
Dynein gamma chain, flagellar outer arm (513 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 61 (121 kDa, Protein from Chlamydomonas reinhardtii)
Dynein light chain 9 (12 kDa, Protein from Chlamydomonas reinhardtii)
Aaa+ atpase domain-containing protein (464 kDa, Protein from Chlamydomonas reinhardtii)
Duf4201 domain-containing protein (55 kDa, Protein from Chlamydomonas reinhardtii)
Dynein regulatory complex protein 10 (40 kDa, Protein from Chlamydomonas reinhardtii)
Calmodulin (18 kDa, Protein from Chlamydomonas reinhardtii)
Meiosis-specific nuclear structural protein 1 (59 kDa, Protein from Chlamydomonas reinhardtii)
Cilia- and flagella-associated protein 58 (102 kDa, Protein from Chlamydomonas reinhardtii)
Wd_repeats_region domain-containing protein (63 kDa, Protein from Chlamydomonas reinhardtii)
Dynein regulatory complex protein 9 (46 kDa, Protein from Chlamydomonas reinhardtii)

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EMD-9976

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Structure of the phycobilisome from the red alga Porphyridium purpureum

Release date: Dec. 11, 2019
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6kgx

Ma JF, You X, Sun S, Wang XX, Qin S, Sui SF

Nature (2020) 579 pp. 146-151 [ DOI: doi:10.1038/s41586-020-2020-7 Pubmed: 32076272 ]

Sample:

Lrc4 (16 kDa, Protein from Red alga)
Lr9 (31 kDa, Protein from Red alga)
Lr4 (31 kDa, Protein from Red alga)
Lr3 (37 kDa, Protein from Red alga)
Lr1 (39 kDa, Protein from Red alga)
Allophycocyanin beta subunit (17 kDa, Protein from Red alga)
Lr5 (29 kDa, Protein from Red alga)
Lr2_hb (43 kDa, Protein from Red alga)
Lrc6 (26 kDa, Protein from Red alga)
Allophycocyanin beta 18 subunit (19 kDa, Protein from Red alga)
Lrc3 (55 kDa, Protein from Red alga)
Phycoerythrin alpha subunit (17 kDa, Protein from Red alga)
C-phycocyanin alpha subunit (17 kDa, Protein from Red alga)
B-phycoerythrin beta chain (18 kDa, Protein from Red alga)
Lr8 (31 kDa, Protein from Red alga)
C-phycocyanin beta subunit (18 kDa, Protein from Red alga)
Lrc2 (53 kDa, Protein from Red alga)
Allophycocyanin alpha subunit (17 kDa, Protein from Red alga)
Phycoerythrobilin (588 Da, Ligand)
Lr2 (32 kDa, Protein from Red alga)
Lr7 (36 kDa, Protein from Red alga)
Phycobilisome rod-core linker polypeptide (26 kDa, Protein from Red alga)
Complex of phycobilisome from red alga p.purpureum. (Complex from Porphyridium purpureum)
Phycocyanobilin (588 Da, Ligand)
Allophycocyanin gamma subunit (18 kDa, Protein from Red alga)
Lc (10 kDa, Protein from Red alga)
Lrc5 (30 kDa, Protein from Red alga)
Phycourobilin (590 Da, Ligand)
Phycobilisome linker polypeptide (99 kDa, Protein from Red alga)

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