Cryo-EM structure of MRV full core
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9cyx
Q-score: 0.535
Liu X, Xia X, Martynowycz MW, Gonen T, Zhou ZH
Nat Commun (2024) 15 pp. 10638-10638 [ Pubmed: 39639006 DOI: doi:10.1038/s41467-024-54968-7 ]
- Mammalian orthoreovirus 3 dearing (Virus from Mammalian orthoreovirus 3 Dearing)
- Inner capsid protein sigma-2 (47 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Lambda 1 (141 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Outer capsid protein lambda-2 (143 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
Cryo-EM structure of MRV virion
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9cyy
Q-score: 0.586
Liu X, Xia X, Martynowycz MW, Gonen T, Zhou ZH
Nat Commun (2024) 15 pp. 10638-10638 [ Pubmed: 39639006 DOI: doi:10.1038/s41467-024-54968-7 ]
- Outer capsid protein sigma-3 (41 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Outer capsid protein mu-1 (76 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Mammalian orthoreovirus 3 dearing (Virus from Mammalian orthoreovirus 3 Dearing)
- Outer capsid protein lambda-2 (144 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Mu2 (83 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Lambda 1 (141 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Rna-directed rna polymerase (142 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Inner capsid protein sigma-2 (47 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8spq
Q-score: 0.431
Hibshman GN, Bravo JPK, Hooper MM, Dangerfield TL, Zhang H, Finkelstein IJ, Johnson KA, Taylor DW
Nat Commun (2024) 15 pp. 3663-3663 [ DOI: doi:10.1038/s41467-024-47830-3 Pubmed: 38688943 ]
- Ts (5 kDa, DNA from Escherichia phage Lambda)
- Ts (16 kDa, DNA from Escherichia phage Lambda)
- Magnesium ion (24 Da, Ligand)
- Ternary complex of spry-cas9 with lambda 1 grna and lambda 1 dna (211 kDa, Complex from Streptococcus pyogenes)
- Crispr-associated endonuclease cas9/csn1 (159 kDa, Protein from Streptococcus pyogenes serotype M1)
- Grna (31 kDa, RNA from Streptococcus pyogenes)
- Nts (5 kDa, DNA from Escherichia phage Lambda)
SpRY-Cas9:gRNA complex targeting TTC PAM DNA
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 8sqh
Q-score: 0.379
Hibshman GN, Bravo JPK, Hooper MM, Dangerfield TL, Zhang H, Finkelstein IJ, Johnson KA, Taylor DW
Nat Commun (2024) 15 pp. 3663-3663 [ DOI: doi:10.1038/s41467-024-47830-3 Pubmed: 38688943 ]
- Ts (5 kDa, DNA from Escherichia phage Lambda)
- Magnesium ion (24 Da, Ligand)
- Nts (16 kDa, DNA from Escherichia phage Lambda)
- Ts (4 kDa, DNA from Escherichia phage Lambda)
- Crispr-associated endonuclease cas9/csn1 (159 kDa, Protein from Streptococcus pyogenes)
- Grna (31 kDa, RNA from Streptococcus pyogenes)
- Ternary complex of spry-cas9 with lambda 1 grna and lambda 1 dna oligo (211 kDa, Complex from Streptococcus pyogenes)
Cryo-EM Structure of PG9RSH DU011 Fab in complex with BG505 DS-SOSIP.664
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8fk5
Q-score: 0.456
Holt GT, Gorman J, Wang S, Lowegard AU, Zhang B, Liu T, Lin BC, Louder MK, Frenkel MS, McKee K, O'Dell S, Rawi R, Shen CH, Doria-Rose NA, Kwong PD, Donald BR
Cell Rep (2023) 42 pp. 112711-112711 [ Pubmed: 37436900 DOI: doi:10.1016/j.celrep.2023.112711 ]
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
- Immunoglobulin lambda-1 light chain-like (22 kDa, Protein from Homo sapiens)
- Immunoblobulin g1 fab heavy chain variable region (fragment) (27 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cryo-em structure of pg9rsh du011 fab in complex with bg505 ds-sosip.664 (Complex from Human immunodeficiency virus 1)
AL amyloid fibril from a lambda 1 light chain
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 7nsl
Q-score: 0.523
Radamaker L, Karimi-Farsijani S, Andreotti G, Baur J, Neumann M, Schreiner S, Berghaus N, Motika R, Haupt C, Walther P, Schmidt V, Huhn S, Hegenbart U, Schonland SO, Wiese S, Read C, Schmidt M, Fandrich M
Nat Commun (2021) 12 pp. 6434-6434 [ Pubmed: 34741031 DOI: doi:10.1038/s41467-021-26553-9 ]
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7elh
Q-score: 0.478
Pan M, Alvarez-Cabrera AL, Kang JS, Wang L, Fan C, Zhou ZH
Nat Commun (2021) 12 pp. 4176-4176 [ DOI: doi:10.1038/s41467-021-24455-4 Pubmed: 34234134 ]
- Phosphate ion (94 Da, Ligand)
- Lambda 1 (122 kDa, Protein from Mammalian orthoreovirus 3)
- Mammalian orthoreovirus 3 dearing (Virus from Mammalian orthoreovirus 3 Dearing)
- Transcript rna (1 kDa, RNA from Mammalian orthoreovirus 3 Dearing)
- Minor core protein mu2 (83 kDa, Protein from Mammalian orthoreovirus 3)
- Lambda 1 (19 kDa, Protein from Mammalian orthoreovirus 3)
- Rna (60-mer) (19 kDa, RNA from Mammalian orthoreovirus 3 Dearing)
- Rna-directed rna polymerase (142 kDa, Protein from Mammalian orthoreovirus 3)
AL amyloid fibril from a lambda 1 light chain
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 6ic3
Q-score: 0.475
Radamaker L, Lin YH, Annamalai K, Huhn S, Hegenbart U, Schonland SO, Fritz G, Schmidt M, Fandrich M
Nat Commun (2019) 10 pp. 1103-1103 [ Pubmed: 30894526 DOI: doi:10.1038/s41467-019-09032-0 ]
- Amyloid fibril of an antibody lambda 1 light chain (2 MDa, Complex from Homo sapiens)
- Lambda 1 light chain fragment, residues 3-118 (12 kDa, Protein from Homo sapiens)