Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 8rd8
Q-score: 0.637
Helena-Bueno K, Rybak MY, Ekemezie CL, Sullivan R, Brown CR, Dingwall C, Basle A, Schneider C, Connolly JPR, Blaza JN, Csorgo B, Moynihan PJ, Gagnon MG, Hill CH, Melnikov SV
Nature (2024) 626 pp. 1125-1132 [ Pubmed: 38355796 DOI: doi:10.1038/s41586-024-07041-8 ]
- Small ribosomal subunit protein us15 (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul22 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us4 (24 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us17 (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us2 (29 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul23 (12 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Psychrobacter urativorans)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein bs18 (8 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl31b (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl25 (23 kDa, Protein from Psychrobacter urativorans)
- Methyl-accepting chemotaxis protein (41 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Psychrobacter urativorans)
- 5s rrna (36 kDa, RNA from Psychrobacter urativorans)
- Large ribosomal subunit protein ul4 (21 kDa, Protein from Psychrobacter urativorans)
- 23s rrna (933 kDa, RNA from Psychrobacter urativorans)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Psychrobacter urativorans)
- Ribosomes isolated from ice-treated cultures of psychrobacter urativorans. (Complex from Psychrobacter urativorans)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl19 (14 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul5 (19 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul13 (15 kDa, Protein from Psychrobacter urativorans)
- 30s ribosomal protein s30 (14 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us7 (17 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl9 (18 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl36 (4 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl28 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs6 (15 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Psychrobacter urativorans)
- 16s rrna (514 kDa, RNA from Psychrobacter urativorans)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Psychrobacter urativorans)
- Elongation factor tu (43 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl32 (7 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us5 (18 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Psychrobacter urativorans)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8rdv
Q-score: 0.627
Helena-Bueno K, Rybak MY, Ekemezie CL, Sullivan R, Brown CR, Dingwall C, Basle A, Schneider C, Connolly JPR, Blaza JN, Csorgo B, Moynihan PJ, Gagnon MG, Hill CH, Melnikov SV
Nature (2024) 626 pp. 1125-1132 [ Pubmed: 38355796 DOI: doi:10.1038/s41586-024-07041-8 ]
- Small ribosomal subunit protein us15 (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul22 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us4 (24 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us17 (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us2 (29 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul23 (12 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs18 (8 kDa, Protein from Psychrobacter urativorans)
- Heterogenous trna (23 kDa, RNA from Psychrobacter urativorans)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl31b (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl25 (23 kDa, Protein from Psychrobacter urativorans)
- Methyl-accepting chemotaxis protein (41 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Psychrobacter urativorans)
- 5s rrna (36 kDa, RNA from Psychrobacter urativorans)
- Large ribosomal subunit protein ul4 (21 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Psychrobacter urativorans)
- Ribosomes isolated from ice-treated cultures of psychrobacter urativorans. (Complex from Psychrobacter urativorans)
- Large ribosomal subunit protein bl19 (14 kDa, Protein from Psychrobacter urativorans)
- Heterogenous mrna (1 kDa, RNA from Psychrobacter urativorans)
- Large ribosomal subunit protein ul5 (19 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul13 (15 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us7 (17 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl36 (4 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl9 (18 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl28 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs6 (15 kDa, Protein from Psychrobacter urativorans)
- 23s rrna (933 kDa, RNA from Psychrobacter urativorans)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Psychrobacter urativorans)
- 16s rrna (514 kDa, RNA from Psychrobacter urativorans)
- Elongation factor tu (43 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl32 (7 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us5 (18 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Psychrobacter urativorans)
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 8rdw
Q-score: 0.604
Helena-Bueno K, Rybak MY, Ekemezie CL, Sullivan R, Brown CR, Dingwall C, Basle A, Schneider C, Connolly JPR, Blaza JN, Csorgo B, Moynihan PJ, Gagnon MG, Hill CH, Melnikov SV
Nature (2024) 626 pp. 1125-1132 [ DOI: doi:10.1038/s41586-024-07041-8 Pubmed: 38355796 ]
- Large ribosomal subunit protein ul5 (19 kDa, Protein from Psychrobacter urativorans)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl36 (4 kDa, Protein from Psychrobacter urativorans)
- Ribosomes isolated from ice-treated cultures of psychrobacter urativorans. (Complex from Psychrobacter urativorans)
- Large ribosomal subunit protein ul4 (21 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl28 (9 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us2 (29 kDa, Protein from Psychrobacter urativorans)
- 5s rrna (36 kDa, RNA from Psychrobacter urativorans)
- Small ribosomal subunit protein us5 (18 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul18 (12 kDa, Protein from Psychrobacter urativorans)
- Water (18 Da, Ligand)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul13 (15 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl25 (23 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl12 (12 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl27 (9 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us4 (24 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl19 (14 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Psychrobacter urativorans)
- 16s rrna (514 kDa, RNA from Psychrobacter urativorans)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl17 (13 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs18 (8 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl9 (18 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl32 (7 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl31b (10 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Psychrobacter urativorans)
- Elongation factor tu (43 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul22 (11 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us17 (10 kDa, Protein from Psychrobacter urativorans)
- Methyl-accepting chemotaxis protein (41 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul23 (12 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs6 (15 kDa, Protein from Psychrobacter urativorans)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Psychrobacter urativorans)
- Small ribosomal subunit protein us7 (17 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Psychrobacter urativorans)
- 23s rrna (933 kDa, RNA from Psychrobacter urativorans)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Psychrobacter urativorans)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Psychrobacter urativorans)