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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

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and development of technology

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new instruments and methods

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life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"Lhca7" AND xref_links:"interpro"

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EMD-11588

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Structure of low-light grown Chlorella ohadii Photosystem I

Release date: July 28, 2021
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6zzx
Q-score: 0.621

Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rogner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R

Nat Plants (2021) 7 pp. 1314-1322 [ DOI: doi:10.1038/s41477-021-00983-1 Pubmed: 34462576 ]

Sample:

Phylloquinone (450 Da, Ligand)
Photosystem i reaction center subunit chloroplastic (10 kDa, Protein from Chlorella ohadii)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Chlorella ohadii)
Photosystem i reaction center subunit chloroplastic (8 kDa, Protein from Chlorella ohadii)
Photosystem i reaction center subunit chloroplastic (15 kDa, Protein from Chlorella ohadii)
1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Chlorella ohadii)
Beta,beta-caroten-4-one (550 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Chlorella ohadii)
Glutathione reductase (26 kDa, Protein from Chlorella ohadii)
Benzene-1,3,5-triol (126 Da, Ligand)
Beta-carotene (536 Da, Ligand)
(3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
Photosystem i reaction center subunit viii (3 kDa, Protein from Chlorella ohadii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlorella ohadii)
O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
Chlorophyll b (907 Da, Ligand)
(2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
Psi-f (18 kDa, Protein from Chlorella ohadii)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Water (18 Da, Ligand)
Photosystem i (1 MDa, Complex from Chlorella ohadii)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Chlorella ohadii)
Photosystem i iron-sulfur center (8 kDa, Protein from Chlorella ohadii)
Photosystem i reaction center subunit ix (4 kDa, Protein from Chlorella ohadii)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlorella ohadii)
Palmitic acid (256 Da, Ligand)
Lhca7 (24 kDa, Protein from Chlorella ohadii)
(3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
Chlorophyll a isomer (893 Da, Ligand)
Sphingosine (299 Da, Ligand)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
Tripalmitoylglycerol (807 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Phosphatidylethanolamine (734 Da, Ligand)
Oleic acid (282 Da, Ligand)
1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
Photosystem i subunit o (9 kDa, Protein from Chlorella ohadii)
[2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium (440 Da, Ligand)
Photosystem i reaction center subunit iv (7 kDa, Protein from Chlorella ohadii)
Astaxanthin (596 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Diacyl glycerol (625 Da, Ligand)
Lhca4 (23 kDa, Protein from Chlorella ohadii)
Photosystem i reaction center subunit xi (16 kDa, Protein from Chlorella ohadii)
Photosystem i reaction center subunit vi-chloroplastic-like (10 kDa, Protein from Chlorella ohadii)
Photosystem i reaction center subunit xii (3 kDa, Protein from Chlorella ohadii)

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EMD-9678

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Photosystem I of Chlamydomonas reinhardtii

Release date: June 20, 2018
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6ijj
Q-score: 0.537

Su X, Ma J, Pan X, Zhao X, Chang W, Liu Z, Zhang X, Li M

Nat Plants (2019) 5 pp. 273-281 [ DOI: doi:10.1038/s41477-019-0380-5 Pubmed: 30850819 ]

Sample:

Phylloquinone (450 Da, Ligand)
Lhca3 (32 kDa, Protein from Chlamydomonas reinhardtii)
Lhca5 (30 kDa, Protein from Chlamydomonas reinhardtii)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Lhca7 (26 kDa, Protein from Chlamydomonas reinhardtii)
Psab (82 kDa, Protein from Chlamydomonas reinhardtii)
Beta-carotene (536 Da, Ligand)
Lhca1 (26 kDa, Protein from Chlamydomonas reinhardtii)
Chlamydomonas reinhardtii psi with eight light harvesting antennae (Complex from Chlamydomonas reinhardtii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Psak (16 kDa, Protein from Chlamydomonas reinhardtii)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Psaa (83 kDa, Protein from Chlamydomonas reinhardtii)
Psac (8 kDa, Protein from Chlamydomonas reinhardtii)
Lhca4 (31 kDa, Protein from Chlamydomonas reinhardtii)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Psae (16 kDa, Protein from Chlamydomonas reinhardtii)
Psaj (4 kDa, Protein from Chlamydomonas reinhardtii)
Psaf (24 kDa, Protein from Chlamydomonas reinhardtii)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Psai (10 kDa, Protein from Chlamydomonas reinhardtii)
Lhca8 (29 kDa, Protein from Chlamydomonas reinhardtii)
Lhca6 (35 kDa, Protein from Chlamydomonas reinhardtii)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Psad (21 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a (893 Da, Ligand)
Psal (27 kDa, Protein from Chlamydomonas reinhardtii)

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EMD-9680

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Photosystem of green alga

Release date: June 20, 2018
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6ijo
Q-score: 0.469

Su X, Ma J, Pan X, Zhao X, Chang W, Liu Z, Zhang X, Li M

Nat Plants (2019) 5 pp. 273-281 [ DOI: doi:10.1038/s41477-019-0380-5 Pubmed: 30850819 ]

Sample:

Lhca9 (22 kDa, Protein from Chlamydomonas reinhardtii)
Chainx (1 kDa, Protein from Chlamydomonas reinhardtii)
Phylloquinone (450 Da, Ligand)
Lhca3 (32 kDa, Protein from Chlamydomonas reinhardtii)
Lhca5 (30 kDa, Protein from Chlamydomonas reinhardtii)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Lhca7 (26 kDa, Protein from Chlamydomonas reinhardtii)
Psag (16 kDa, Protein from Chlamydomonas reinhardtii)
Chlamydomonas reinhardtii psi with ten light harvesting antennae (Complex from Chlamydomonas reinhardtii)
Psab (82 kDa, Protein from Chlamydomonas reinhardtii)
Beta-carotene (536 Da, Ligand)
Lhca1 (26 kDa, Protein from Chlamydomonas reinhardtii)
Psah (17 kDa, Protein from Chlamydomonas reinhardtii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Psak (16 kDa, Protein from Chlamydomonas reinhardtii)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Psaa (83 kDa, Protein from Chlamydomonas reinhardtii)
Psac (8 kDa, Protein from Chlamydomonas reinhardtii)
Psad (27 kDa, Protein from Chlamydomonas reinhardtii)
Lhca4 (31 kDa, Protein from Chlamydomonas reinhardtii)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Psae (16 kDa, Protein from Chlamydomonas reinhardtii)
Psaj (4 kDa, Protein from Chlamydomonas reinhardtii)
Lhca2 (24 kDa, Protein from Chlamydomonas reinhardtii)
Psaf (24 kDa, Protein from Chlamydomonas reinhardtii)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Psai (10 kDa, Protein from Chlamydomonas reinhardtii)
Lhca8 (29 kDa, Protein from Chlamydomonas reinhardtii)
Lhca6 (35 kDa, Protein from Chlamydomonas reinhardtii)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Psal (27 kDa, Protein from Chlamydomonas reinhardtii)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: