Cryo-EM structure of the SFV009 3G01 Fab in complex with A/California/04/2009
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9dm0
Q-score: 0.511
Lin TH, Lee CD, Fernandez-Quintero ML, Ferguson JA, Han J, Zhu X, Yu W, Guthmiller JJ, Krammer F, Wilson PC, Ward AB, Wilson IA
Nat Commun (2025) 16 pp. 1268-1268 [ DOI: doi:10.1038/s41467-025-56496-4 Pubmed: 39894881 ]
- Hemagglutinin (35 kDa, Protein from Influenza A virus (A/California/04/2009(H1N1)))
- Hemagglutinin ha1/2 (Complex)
- Fab (Complex)
- Fab light chain (11 kDa, Protein from Homo sapiens)
- Hemagglutinin ca09 homotrimer bound to anchor fab (Complex from Homo sapiens)
- Hemagglutinin (26 kDa, Protein from Influenza A virus (A/California/04/2009(H1N1)))
- Fab heavy chain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map
Resolution: 3.83 Å
EM Method: Single-particle
Fitted PDBs: 8kdd
Q-score: 0.432
Lee Y, Jin C, Ohgaki R, Xu M, Ogasawara S, Warshamanage R, Yamashita K, Murshudov G, Nureki O, Murata T, Kanai Y
Nat Commun (2025) 16 pp. 1635-1635 [ Pubmed: 39952931 DOI: doi:10.1038/s41467-025-56903-w ]
- Fab170 (Complex from Mus musculus)
- Fab170 light chain (24 kDa, Protein from Mus musculus)
- Nanvuranlat (472 Da, Ligand)
- 4f2 cell-surface antigen heavy chain (68 kDa, Protein from Homo sapiens)
- Lat1-cd98hc-fab170 (173 kDa, Complex)
- Fab170 heavy chain (24 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Lat1-cd98hc (Complex from Homo sapiens)
- Large neutral amino acids transporter small subunit 1 (56 kDa, Protein from Homo sapiens)
Structure of LAT1-CD98hc-Fab170 in complex with BCH, consensus map
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 8kdg
Q-score: 0.424
Lee Y, Jin C, Ohgaki R, Xu M, Ogasawara S, Warshamanage R, Yamashita K, Murshudov G, Nureki O, Murata T, Kanai Y
Nat Commun (2025) 16 pp. 1635-1635 [ Pubmed: 39952931 DOI: doi:10.1038/s41467-025-56903-w ]
- Fab170 (Complex from Mus musculus)
- Fab170 light chain (24 kDa, Protein from Mus musculus)
- (1~{s},2~{r},4~{r})-2-azanylbicyclo[2.2.1]heptane-2-carboxylic acid (155 Da, Ligand)
- 4f2 cell-surface antigen heavy chain (68 kDa, Protein from Homo sapiens)
- Lat1-cd98hc-fab170 (173 kDa, Complex)
- Fab170 heavy chain (24 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Lat1-cd98hc (Complex from Homo sapiens)
- Large neutral amino acids transporter small subunit 1 (56 kDa, Protein from Homo sapiens)
Structure of apo inward-open LAT1-CD98hc-Fab170 in nanodisc, consensus map
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 8kdi
Q-score: 0.43
Lee Y, Jin C, Ohgaki R, Xu M, Ogasawara S, Warshamanage R, Yamashita K, Murshudov G, Nureki O, Murata T, Kanai Y
Nat Commun (2025) 16 pp. 1635-1635 [ Pubmed: 39952931 DOI: doi:10.1038/s41467-025-56903-w ]
- Fab170 (Complex from Mus musculus)
- Fab170 light chain (24 kDa, Protein from Mus musculus)
- Lat1-cd98hc-fab170 (Complex)
- 4f2 cell-surface antigen heavy chain (68 kDa, Protein from Homo sapiens)
- Fab170 heavy chain (24 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Lat1-cd98hc (Complex from Homo sapiens)
- Large neutral amino acids transporter small subunit 1 (56 kDa, Protein from Homo sapiens)
Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 7C8
Adu OF, Lee H, Fruh SP, Schoenle MV, Weichert WS, Flyak AI, Hafenstein SL, Parrish CR
PNAS (2025) 122 pp. e2423460122-e2423460122 [ Pubmed: 39951487 DOI: doi:10.1073/pnas.2423460122 ]
- Heavy chain antibody fragment (13 kDa, Protein from Canis lupus familiaris)
- Capsid protein 2 (61 kDa, Protein from Canine parvovirus 2a)
- Light chain antibody fragment (11 kDa, Protein from Canis lupus familiaris)
- Canine parvovirus 2a (Virus from Canine parvovirus 2a)
Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 3G6
Adu OF, Lee H, Fruh SP, Schoenle MV, Weichert WS, Flyak AI, Hafenstein SL, Parrish CR
PNAS (2025) 122 pp. e2423460122-e2423460122 [ Pubmed: 39951487 DOI: doi:10.1073/pnas.2423460122 ]
- Light chain antibody fragment (11 kDa, Protein from Canis lupus familiaris)
- Capsid protein 2 (61 kDa, Protein from Canine parvovirus 2a)
- Heavy chain antibody fragment (13 kDa, Protein from Canis lupus familiaris)
- Canine parvovirus 2a (Virus from Canine parvovirus 2a)
Canine parvovirus subtype 2a empty capsid in complex with Fab fragments of Mab 2C5
Adu OF, Lee H, Fruh SP, Schoenle MV, Weichert WS, Flyak AI, Hafenstein SL, Parrish CR
PNAS (2025) 122 pp. e2423460122-e2423460122 [ Pubmed: 39951487 DOI: doi:10.1073/pnas.2423460122 ]
- Capsid protein 2 (61 kDa, Protein from Canine parvovirus 2a)
- Light chain antibody fragment (11 kDa, Protein from Canis lupus familiaris)
- Heavy chain antibody fragment (13 kDa, Protein from Canis lupus familiaris)
- Canine parvovirus 2a (Virus from Canine parvovirus 2a)
CPV2a capsid complexed with scFv2
Adu OF, Lee H, Fruh SP, Schoenle MV, Weichert WS, Flyak AI, Hafenstein SL, Parrish CR
PNAS (2025) 122 pp. e2423460122-e2423460122 [ Pubmed: 39951487 DOI: doi:10.1073/pnas.2423460122 ]
- Light-chain of scfv clone 2 (11 kDa, Protein from Canis lupus familiaris)
- Capsid protein (64 kDa, Protein from Canine parvovirus 2b)
- Canine parvovirus 2a (Virus from Canine parvovirus 2a)
- Heavy-chain of scfv clone 2 (14 kDa, Protein from Canis lupus familiaris)
CPV2a capsid complexed with scFv1
Adu OF, Lee H, Fruh SP, Schoenle MV, Weichert WS, Flyak AI, Hafenstein SL, Parrish CR
PNAS (2025) 122 pp. e2423460122-e2423460122 [ Pubmed: 39951487 DOI: doi:10.1073/pnas.2423460122 ]
- Heavy-chain of scfv clone 1 (14 kDa, Protein from Canis lupus familiaris)
- Light-chain of scfv clone 1 (11 kDa, Protein from Canis lupus familiaris)
- Capsid protein (64 kDa, Protein from Canine parvovirus 2b)
- Canine parvovirus 2a (Virus from Canine parvovirus 2a)
Structure of rat beta-arrestin 1 by fiducial-assisted cryo-EM
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 9dng
Q-score: 0.431
Kahsai AW, Pakharukova N, Kwon HY, Shah KS, Liang-Lin JG, Del Real CT, Shim PJ, Lee MA, Ngo VA, Shreiber BN, Liu S, Schwalb AM, Espinoza EF, Thomas BN, Kunzle CA, Smith JS, Wang J, Kim J, Zhang X, Rockman HA, Thomsen ARB, Rein LAM, Shi L, Ahn S, Masoudi A, Lefkowitz RJ
bioRxiv (2024) [ Pubmed: 39763753 DOI: doi:10.1101/2024.12.27.630464 ]
- Beta-arrestin 1 with insertion of soluble cytochrome b562 bound to anti-bril fab (Complex from Rattus norvegicus)
- Anti-bril fab heavy chain (23 kDa, Protein from Homo sapiens)
- Anti-bril fab light chain (23 kDa, Protein from Homo sapiens)
- Beta-arrestin-1,soluble cytochrome b562 (55 kDa, Protein from Rattus norvegicus)